Gene annotation
| Transcriptome id | Sobic.001G321800.1 |
|---|---|
| Synonym | RBL2, Sb01g031210, ATRBL2 |
| Functional annotation | OsRhmbd7 - Putative Rhomboid homologue, expressed |
| UniProt | C5WUM0 |
| Pfam | PF01694 |
| Panther DB | PTHR22936 PTHR22936:SF35 |
| NCBI CDD | KOG2289; Rhomboid family proteins |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT1G63120 : RHOMBOID-like 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g02530.1 : OsRhmbd7 - Putative Rhomboid homologue, expressed |
| MaizeGDB (Corn) | Zm00025a003075 |
| Brachypodium | KQJ84106 |
| Barley | HORVU2Hr1G095170.2 , HORVU2Hr1G095170.3 , HORVU2Hr1G095170.5 , HORVU2Hr1G095170.8 , HORVU2Hr1G095170.9 , HORVU2Hr1G095170.6 , HORVU2Hr1G095170.7 , HORVU2Hr1G095170.4 , HORVU2Hr1G095170.10 , HORVU2Hr1G095170.11 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G321800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G205600 | glycosyl hydrolases family 16, putative, expressed | - |
| 2 | Sobic.004G257300 | GPI-anchored protein, putative, expressed | - |
| 3 | Sobic.001G209800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 4 | Sobic.010G030900 | glycosyltransferase, putative, expressed | - |
| 5 | Sobic.001G476400 | - | - |
| 6 | Sobic.001G464900 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 7 | Sobic.007G223200 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 8 | Sobic.006G110000 | - | - |
| 9 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 10 | Sobic.001G173300 | alpha-1,4-glucan-protein synthase, putative, expressed | K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase |
| 11 | Sobic.001G322200 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 12 | Sobic.004G032300 | OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed | - |
| 13 | Sobic.002G131800 | copine, putative, expressed | K16280: E3 ubiquitin-protein ligase RGLG |
| 14 | Sobic.009G242700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsCML14 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 15 | Sobic.009G027900 | TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed | - |
| 16 | Sobic.009G184400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 17 | Sobic.003G153300 | mitochondrial carrier protein, putative, expressed | K15121: solute carrier family 25, member 44 |
| 18 | Sobic.010G008600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLD2 - cellulose synthase-like family D, expressed | - |
| 19 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 20 | Sobic.003G150400 | Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
