Gene annotation
Transcriptome id Sobic.006G031900.1
Synonym ATEXPA11, ATHEXPALPHA1.14, ATEXP11, EXP11, Sb06g003250, EXPA11
Functional annotation expansin precursor, putative, expressed
UniProt C5YD91
Pfam PF03330 PF01357
Panther DB PTHR31867 PTHR31867:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20190 : expansin 11
RAP-DB (Rice) LOC_Os04g15840.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a043994 , Zm00025a008818 , Zm00025a019850 , Zm00025a019851 , Zm00025a019852 , Zm00025a006808 , Zm00025a055602 , Zm00025a016421
Brachypodium KQJ96856 , KQK23578 , KQK23579 , KQK01952 , KQK10365 , KQK05753 , KQK03594 , KQK21504
Barley HORVU1Hr1G036910.1 , HORVU1Hr1G069830.2 , HORVU1Hr1G069830.1 , HORVU1Hr1G069830.7 , HORVU1Hr1G069830.6 , HORVU1Hr1G069830.4 , HORVU3Hr1G081180.4 , HORVU3Hr1G081180.3 , HORVU3Hr1G081180.2 , HORVU3Hr1G081180.1 , HORVU5Hr1G113580.5 , HORVU3Hr1G081230.9 , HORVU3Hr1G081230.8 , HORVU3Hr1G081230.5 , HORVU3Hr1G081230.3 , HORVU3Hr1G081230.2 , HORVU5Hr1G113580.4 , HORVU3Hr1G075210.1 , HORVU3Hr1G075210.2 , HORVU2Hr1G010800.1 , HORVU5Hr1G113580.6 , HORVU5Hr1G113580.3 , HORVU5Hr1G113580.2
Wheat TraesCS3D02G338400 , TraesCS2D02G065000 , TraesCS4B02G272600 , TraesCS4B02G271200 , TraesCS4A02G339200 , TraesCS5D02G494800 , TraesCS5A02G481200 , TraesCS3B02G376800 , TraesCS1D02G299700 , TraesCS2B02G078800 , TraesCS2A02G066600 , TraesCS1A02G300200 , TraesCS1A02G300200 , TraesCS4A02G034300 , TraesCS1B02G310300 , TraesCS5D02G535500 , TraesCS7D02G387400 , TraesCS7D02G387400 , TraesCS3A02G344800 , TraesCS4D02G270400 , TraesCS5B02G494400 , TraesCS3B02G376900 , TraesCS3D02G338600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -
2 Sobic.004G086500 expressed protein -
3 Sobic.004G277700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.001G157700 PLA IIIA/PLP7, putative, expressed -
5 Sobic.002G178800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
6 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
7 Sobic.005G070700 - -
8 Sobic.001G274300 GASR1 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, putative -
9 Sobic.001G459300 - -
10 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
11 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
12 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
13 Sobic.003G316601 - -
14 Sobic.006G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@- -
15 Sobic.001G158200 PLA IIIA/PLP7, putative, expressed -
16 Sobic.009G059800 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
17 Sobic.002G255600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.002G344201 - -
19 Sobic.010G237400 ZmEBE-1 protein, putative, expressed -
20 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic006G031900 Sobic006G031900 Sobic002G343600 Sobic002G343600 Sobic006G031900--Sobic002G343600 Sobic004G086500 Sobic004G086500 Sobic006G031900--Sobic004G086500 Sobic004G277700 Sobic004G277700 Sobic006G031900--Sobic004G277700 Sobic001G157700 Sobic001G157700 Sobic006G031900--Sobic001G157700 Sobic002G178800 Sobic002G178800 Sobic006G031900--Sobic002G178800 Sobic010G048600 Sobic010G048600 Sobic006G031900--Sobic010G048600 Sobic005G070700 Sobic005G070700 Sobic006G031900--Sobic005G070700 Sobic001G274300 Sobic001G274300 Sobic006G031900--Sobic001G274300 Sobic001G459300 Sobic001G459300 Sobic006G031900--Sobic001G459300 Sobic006G076000 Sobic006G076000 Sobic002G343600--Sobic006G076000 Sobic002G343600--Sobic004G086500 Sobic002G343600--Sobic004G277700 Sobic002G343600--Sobic006G031900 Sobic009G059800 Sobic009G059800 Sobic002G343600--Sobic009G059800 Sobic002G343600--Sobic010G048600 Sobic001G456000 Sobic001G456000 Sobic002G343600--Sobic001G456000 Sobic007G218400 Sobic007G218400 Sobic002G343600--Sobic007G218400 Sobic009G059932 Sobic009G059932 Sobic002G343600--Sobic009G059932 Sobic004G086500--Sobic004G277700 Sobic004G086500--Sobic009G059800 Sobic010G237400 Sobic010G237400 Sobic004G086500--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic004G086500--Sobic003G369800 Sobic004G056500 Sobic004G056500 Sobic004G086500--Sobic004G056500 Sobic004G086500--Sobic009G059932 Sobic002G102800 Sobic002G102800 Sobic004G086500--Sobic002G102800 Sobic004G254300 Sobic004G254300 Sobic004G086500--Sobic004G254300 Sobic009G059866 Sobic009G059866 Sobic004G086500--Sobic009G059866 Sobic004G277700--Sobic009G059800 Sobic004G277700--Sobic004G086500 Sobic002G344201 Sobic002G344201 Sobic004G277700--Sobic002G344201 Sobic004G277700--Sobic009G059932 Sobic004G277700--Sobic007G218400 Sobic004G277700--Sobic010G237400 Sobic004G277700--Sobic001G456000 Sobic004G277700--Sobic004G254300 Sobic004G277700--Sobic004G056500 Sobic001G157700--Sobic006G031900 Sobic001G158200 Sobic001G158200 Sobic001G157700--Sobic001G158200 Sobic004G070900 Sobic004G070900 Sobic001G157700--Sobic004G070900 Sobic001G157700--Sobic002G343600 Sobic009G048100 Sobic009G048100 Sobic001G157700--Sobic009G048100 Sobic001G157700--Sobic002G178800 Sobic001G157700--Sobic010G048600 Sobic001G157700--Sobic005G070700 Sobic005G070101 Sobic005G070101 Sobic001G157700--Sobic005G070101 Sobic002G078900 Sobic002G078900 Sobic002G178800--Sobic002G078900 Sobic002G178800--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic002G178800--Sobic001G459400 Sobic002G178700 Sobic002G178700 Sobic002G178800--Sobic002G178700 Sobic002G178800--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic002G178800--Sobic001G106500 Sobic003G092300 Sobic003G092300 Sobic002G178800--Sobic003G092300 Sobic003G006000 Sobic003G006000 Sobic002G178800--Sobic003G006000 Sobic002G178800--Sobic001G456000 Sobic010G048600--Sobic001G459300 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic010G048600--Sobic002G078900 Sobic010G183800 Sobic010G183800 Sobic010G048600--Sobic010G183800 Sobic005G070700--Sobic001G459300 Sobic005G070700--Sobic010G048600 Sobic005G070700--Sobic001G459400 Sobic005G070700--Sobic001G274300 Sobic005G070700--Sobic001G106500 Sobic005G070700--Sobic003G092300 Sobic005G070700--Sobic001G456000 Sobic005G070700--Sobic005G070101 Sobic004G168000 Sobic004G168000 Sobic005G070700--Sobic004G168000 Sobic001G274300--Sobic005G070700 Sobic001G274300--Sobic001G459300 Sobic001G274300--Sobic010G048600 Sobic001G274300--Sobic001G459400 Sobic001G274300--Sobic001G106500 Sobic006G015100 Sobic006G015100 Sobic001G274300--Sobic006G015100 Sobic001G274300--Sobic001G456000 Sobic001G274300--Sobic003G092300 Sobic001G274300--Sobic002G078900 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800
Octagon: transcription factors


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