Gene annotation
| Transcriptome id | Sobic.010G171800.2,Sobic.010G171800.1 |
|---|---|
| Synonym | Sb10g022430 |
| Functional annotation | L-ascorbate oxidase precursor, putative, expressed |
| UniProt | C5Z513 , A0A1W0VTI0 |
| Pfam | PF07732 PF07731 PF00394 PF07731 PF00394 |
| Panther DB | PTHR11709 PTHR11709:SF97 |
| NCBI CDD | KOG1263; Multicopper oxidases |
| KEGG Orthology | K00423; L-ascorbate oxidase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0005507copper ion binding GO:0005507copper ion binding GO:0016491oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT5G21105 : Plant L-ascorbate oxidase |
|---|---|
| RAP-DB (Rice) | LOC_Os06g37080.1 : L-ascorbate oxidase precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a046704 , Zm00025a046705 , Zm00025a051107 |
| Brachypodium | KQK17923 , KQK17921 |
| Barley | HORVU7Hr1G087240.2 , HORVU7Hr1G087240.3 , HORVU7Hr1G087250.5 , HORVU7Hr1G087250.4 , HORVU7Hr1G087250.7 , HORVU7Hr1G087250.2 , HORVU7Hr1G087240.1 , HORVU5Hr1G057800.6 , HORVU5Hr1G057800.4 , HORVU7Hr1G087260.1 , HORVU7Hr1G087260.2 , HORVU5Hr1G057800.2 , HORVU5Hr1G057800.5 , HORVU5Hr1G057800.3 , HORVU7Hr1G087250.8 , HORVU7Hr1G087250.1 , HORVU7Hr1G087250.3 , HORVU7Hr1G087250.6 |
| Wheat | TraesCS5A02G191200 , TraesCS7D02G361300 , TraesCS5B02G192000 , TraesCS7A02G361600 , TraesCS7B02G265200 , TraesCS7A02G361800 , TraesCS7B02G265300 , TraesCS5B02G192000 , TraesCS5D02G199900 , TraesCS7D02G361200 |
| Populus | - |
JBrowse
| Sobic.010G171800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G189500 | -(PubMedID : 23108465)@MONOCULM 1, putative, expressed | - |
| 2 | Sobic.006G065400 | expressed protein | - |
| 3 | Sobic.009G120700 | microtubule-binding protein TANGLED1, putative, expressed | K18636: microtubule-binding protein TANGLED1 |
| 4 | Sobic.007G100600 | plastocyanin-like domain containing protein, putative, expressed | - |
| 5 | Sobic.001G160100 | IQ calmodulin-binding motif family protein, putative, expressed | - |
| 6 | Sobic.004G273000 | MYB family transcription factor, putative, expressed | - |
| 7 | Sobic.001G289900 | AT hook motif domain containing protein, expressed | - |
| 8 | Sobic.002G343600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed | - |
| 9 | Sobic.006G076000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@- | - |
| 10 | Sobic.002G095400 | metal transporter Nramp6, putative, expressed | - |
| 11 | Sobic.007G132900 | linker histone H1 and H5 family protein, expressed | - |
| 12 | Sobic.010G274000 | cyclin, putative, expressed | K05868: G2/mitotic-specific cyclin-B1 |
| 13 | Sobic.009G181500 | Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed | - |
| 14 | Sobic.009G048100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed | - |
| 15 | Sobic.004G063900 | expressed protein | - |
| 16 | Sobic.001G091500 | expressed protein | - |
| 17 | Sobic.006G031900 | expansin precursor, putative, expressed | - |
| 18 | Sobic.003G328500 | Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed | K05868: G2/mitotic-specific cyclin-B1 |
| 19 | Sobic.010G163732 | - | - |
| 20 | Sobic.004G047100 | EH domain-containing protein 1, putative, expressed | K12483: EH domain-containing protein 1 |
Gene co-expression network
Octagon: transcription factors
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