Gene annotation
| Transcriptome id | Sobic.001G012700.1 |
|---|---|
| Synonym | Sb01g001250 |
| Functional annotation | regulatory protein, putative, expressed |
| UniProt | C5WSW9 |
| Pfam | PF03407 |
| Panther DB | PTHR24015 PTHR24015:SF903 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G19970 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os03g63280.1 : regulatory protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009026 , Zm00025a026259 , Zm00025a000409 |
| Brachypodium | - |
| Barley | HORVU4Hr1G082520.4 , HORVU4Hr1G082520.3 , HORVU4Hr1G082520.2 , HORVU5Hr1G121600.3 , HORVU5Hr1G121600.2 , HORVU5Hr1G121600.1 , HORVU5Hr1G121600.6 , HORVU5Hr1G121600.5 , HORVU5Hr1G121600.4 , HORVU5Hr1G121440.9 , HORVU5Hr1G121440.8 , HORVU5Hr1G121440.5 , HORVU5Hr1G121440.4 , HORVU5Hr1G121440.7 , HORVU5Hr1G121440.6 , HORVU5Hr1G121440.3 , HORVU5Hr1G121440.2 , HORVU4Hr1G082520.5 , HORVU4Hr1G082520.1 , HORVU3Hr1G094380.1 , HORVU5Hr1G121450.1 , HORVU3Hr1G094370.1 |
| Wheat | TraesCS4A02G339800 , TraesCS5D02G536400 , TraesCS4D02G320100 , TraesCS4A02G339700 , TraesCS5D02G536200 , TraesCS5D02G536400 , TraesCS5B02G549400 , TraesCS3B02G465400 , TraesCS3A02G428200 , TraesCS5A02G495700 , TraesCS5B02G549300 , TraesCS4B02G323100 |
| Populus | - |
JBrowse
| Sobic.001G012700 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G141800 | expressed protein | - |
| 2 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 3 | Sobic.003G244100 | "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 4 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 5 | Sobic.001G466450 | - | - |
| 6 | Sobic.001G466450 | - | - |
| 7 | Sobic.001G466450 | - | - |
| 8 | Sobic.001G466450 | - | - |
| 9 | Sobic.001G466450 | - | - |
| 10 | Sobic.001G466450 | - | - |
| 11 | Sobic.001G466450 | - | - |
| 12 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 13 | Sobic.007G164500 | - | - |
| 14 | Sobic.002G097000 | expressed protein | - |
| 15 | Sobic.001G373600 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 16 | Sobic.001G070401 | - | - |
| 17 | Sobic.003G024600 | CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 18 | Sobic.005G088700 | expressed protein | - |
| 19 | Sobic.001G323600 | transporter family protein, putative, expressed | - |
| 20 | Sobic.002G132500 | - | - |
Gene co-expression network
Octagon: transcription factors
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