Gene annotation
Transcriptome id Sobic.001G062800.1
Synonym lateral organ boundaries, LBD24, SbLBD1, Sb01g005700
Functional annotation "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt C5WY44
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26620 : LOB domain-containing protein 23
RAP-DB (Rice) LOC_Os03g57670.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008500
Brachypodium -
Barley -
Wheat TraesCS1D02G110300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
2 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
3 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
4 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
5 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.007G106050 - -
8 Sobic.001G123900 glucosyltransferase, putative, expressed -
9 Sobic.002G265001 - -
10 Sobic.001G297966 - -
11 Sobic.009G220250 - -
12 Sobic.008G184600 expressed protein -
13 Sobic.002G017000 OsFBX234 - F-box domain containing protein, expressed -
14 Sobic.002G017000 OsFBX234 - F-box domain containing protein, expressed -
15 Sobic.002G017000 OsFBX234 - F-box domain containing protein, expressed -
16 Sobic.004G137300 - -
17 Sobic.002G007600 3-5 exonuclease domain-containing protein, putative, expressed -
18 Sobic.009G003400 expressed protein -
19 Sobic.010G016250 - -
20 Sobic.008G076300 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase


Gene co-expression network
sample Sobic001G062800 Sobic001G062800 Sobic002G109800 Sobic002G109800 Sobic001G062800--Sobic002G109800 Sobic007G106050 Sobic007G106050 Sobic001G062800--Sobic007G106050 Sobic001G123900 Sobic001G123900 Sobic001G062800--Sobic001G123900 Sobic002G265001 Sobic002G265001 Sobic001G062800--Sobic002G265001 Sobic002G109800--Sobic002G109800 Sobic002G109800--Sobic007G106050 Sobic001G297966 Sobic001G297966 Sobic002G109800--Sobic001G297966 Sobic009G220250 Sobic009G220250 Sobic002G109800--Sobic009G220250 Sobic008G184600 Sobic008G184600 Sobic002G109800--Sobic008G184600 Sobic007G106050--Sobic002G109800 Sobic007G106050--Sobic001G297966 Sobic007G106050--Sobic009G220250 Sobic007G106050--Sobic008G184600 Sobic001G123900--Sobic002G109800 Sobic001G123900--Sobic007G106050 Sobic001G123900--Sobic001G297966 Sobic001G123900--Sobic009G220250 Sobic005G085100 Sobic005G085100 Sobic002G265001--Sobic005G085100 Sobic005G170800 Sobic005G170800 Sobic002G265001--Sobic005G170800 Sobic001G354000 Sobic001G354000 Sobic002G265001--Sobic001G354000 Sobic001G082300 Sobic001G082300 Sobic002G265001--Sobic001G082300 Sobic003G079750 Sobic003G079750 Sobic002G265001--Sobic003G079750 Sobic002G382950 Sobic002G382950 Sobic002G265001--Sobic002G382950 Sobic010G193400 Sobic010G193400 Sobic002G265001--Sobic010G193400 Sobic002G265001--Sobic001G062800 Sobic002G318900 Sobic002G318900 Sobic002G265001--Sobic002G318900
Octagon: transcription factors


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