Gene annotation
Transcriptome id Sobic.001G191500.3,Sobic.001G191500.2,Sobic.001G191500.1
Synonym CHR9, Sb01g016830
Functional annotation expressed protein
UniProt A0A1Z5S6E4 , C5WVB2 , C5WVA5
Pfam PF00271 PF00176 PF04851 PF00271 PF00176 PF00271
Panther DB PTHR10799 PTHR10799:SF65
NCBI CDD KOG1001; Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0016787hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G03750 : switch 2
RAP-DB (Rice) LOC_Os05g15890.1,LOC_Os05g15890.2 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017402
Brachypodium KQK14242 , KQK14243 , KQK14244 , PNT74454 , PNT74453
Barley HORVU2Hr1G037590.5 , HORVU2Hr1G037590.6 , HORVU2Hr1G037590.3 , HORVU2Hr1G037590.4 , HORVU2Hr1G037590.7 , HORVU2Hr1G037590.1
Wheat TraesCS2A02G185300 , TraesCS2A02G185300 , TraesCS2B02G222000 , TraesCS2B02G222000 , TraesCS2D02G202400
Populus -


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cDNA sequences
Sobic.001G191500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G190600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, putative, expressed K07007: 3-dehydro-bile acid Delta4,6-reductase
2 Sobic.008G142200 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
3 Sobic.009G137401 - -
4 Sobic.006G157450 - -
5 Sobic.006G072701 - -
6 Sobic.001G190900 ABCG protein(PubMedID : 21265893)@"Orthologous gene of wheat Lr34 gene, expressed in accession AusTRCF 302546, but not expreesed in BTx623 possibly due to transposon insertions in intron 4"(PubMedID : 23117720)@pleiotropic drug resistance protein 15, putative, expressed -
7 Sobic.008G083100 expressed protein -
8 Sobic.004G033650 - -
9 Sobic.009G074800 - -
10 Sobic.001G038700 membrane associated DUF588 domain containing protein, putative, expressed -
11 Sobic.001G001800 expressed protein -
12 Sobic.002G226200 - -
13 Sobic.008G072800 OsMADS33 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.002G209450 - -
15 Sobic.008G170800 OsWAK126 - OsWAK receptor-like protein kinase, expressed -
16 Sobic.004G118000 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
17 Sobic.009G026700 expressed protein -
18 Sobic.004G030850 - -
19 Sobic.009G094200 - -
20 Sobic.005G031400 embryogenesis transmembrane protein, putative, expressed -


Gene co-expression network
sample Sobic001G191500 Sobic001G191500 Sobic008G190600 Sobic008G190600 Sobic001G191500--Sobic008G190600 Sobic008G142200 Sobic008G142200 Sobic001G191500--Sobic008G142200 Sobic009G137401 Sobic009G137401 Sobic001G191500--Sobic009G137401 Sobic006G157450 Sobic006G157450 Sobic001G191500--Sobic006G157450 Sobic006G072701 Sobic006G072701 Sobic001G191500--Sobic006G072701 Sobic001G190900 Sobic001G190900 Sobic001G191500--Sobic001G190900 Sobic008G083100 Sobic008G083100 Sobic001G191500--Sobic008G083100 Sobic004G033650 Sobic004G033650 Sobic001G191500--Sobic004G033650 Sobic009G074800 Sobic009G074800 Sobic001G191500--Sobic009G074800 Sobic008G190600--Sobic009G074800 Sobic008G190600--Sobic001G191500 Sobic005G031400 Sobic005G031400 Sobic008G190600--Sobic005G031400 Sobic008G190600--Sobic008G142200 Sobic008G170800 Sobic008G170800 Sobic008G190600--Sobic008G170800 Sobic008G190600--Sobic006G157450 Sobic003G219300 Sobic003G219300 Sobic008G190600--Sobic003G219300 Sobic001G460900 Sobic001G460900 Sobic008G190600--Sobic001G460900 Sobic002G226200 Sobic002G226200 Sobic008G190600--Sobic002G226200 Sobic004G227700 Sobic004G227700 Sobic008G142200--Sobic004G227700 Sobic008G142200--Sobic001G191500 Sobic009G094200 Sobic009G094200 Sobic008G142200--Sobic009G094200 Sobic008G142200--Sobic008G190600 Sobic003G263900 Sobic003G263900 Sobic008G142200--Sobic003G263900 Sobic008G142200--Sobic004G033650 Sobic009G026700 Sobic009G026700 Sobic008G142200--Sobic009G026700 Sobic001G038700 Sobic001G038700 Sobic008G142200--Sobic001G038700 Sobic008G072800 Sobic008G072800 Sobic008G142200--Sobic008G072800 Sobic009G137401--Sobic001G191500 Sobic009G137401--Sobic001G190900 Sobic003G053750 Sobic003G053750 Sobic009G137401--Sobic003G053750 Sobic004G030850 Sobic004G030850 Sobic009G137401--Sobic004G030850 Sobic003G429600 Sobic003G429600 Sobic009G137401--Sobic003G429600 Sobic008G113200 Sobic008G113200 Sobic009G137401--Sobic008G113200 Sobic001G528900 Sobic001G528900 Sobic009G137401--Sobic001G528900 Sobic009G137401--Sobic008G083100 Sobic009G137401--Sobic006G072701 Sobic006G157450--Sobic001G038700 Sobic006G157450--Sobic008G170800 Sobic006G157450--Sobic001G191500 Sobic001G520000 Sobic001G520000 Sobic006G157450--Sobic001G520000 Sobic010G012200 Sobic010G012200 Sobic006G157450--Sobic010G012200 Sobic003G253700 Sobic003G253700 Sobic006G157450--Sobic003G253700 Sobic003G155000 Sobic003G155000 Sobic006G157450--Sobic003G155000 Sobic001G483001 Sobic001G483001 Sobic006G157450--Sobic001G483001 Sobic006G157450--Sobic008G190600 Sobic006G072701--Sobic008G083100 Sobic004G084600 Sobic004G084600 Sobic006G072701--Sobic004G084600 Sobic006G072701--Sobic001G191500 Sobic006G072701--Sobic009G026700 Sobic002G171901 Sobic002G171901 Sobic006G072701--Sobic002G171901 Sobic007G182300 Sobic007G182300 Sobic006G072701--Sobic007G182300 Sobic006G041200 Sobic006G041200 Sobic006G072701--Sobic006G041200 Sobic006G072701--Sobic009G074800 Sobic001G250750 Sobic001G250750 Sobic006G072701--Sobic001G250750 Sobic003G312900 Sobic003G312900 Sobic001G190900--Sobic003G312900 Sobic001G190900--Sobic009G137401 Sobic001G190900--Sobic001G191500 Sobic003G312800 Sobic003G312800 Sobic001G190900--Sobic003G312800 Sobic001G190900--Sobic009G094200 Sobic003G312600 Sobic003G312600 Sobic001G190900--Sobic003G312600 Sobic001G190900--Sobic006G072701 Sobic001G476600 Sobic001G476600 Sobic001G190900--Sobic001G476600 Sobic001G190900--Sobic008G142200 Sobic008G083100--Sobic006G072701 Sobic008G083100--Sobic004G033650 Sobic008G083100--Sobic001G191500 Sobic008G083100--Sobic008G113200 Sobic008G083100--Sobic009G074800 Sobic008G083100--Sobic009G026700 Sobic008G083100--Sobic007G182300 Sobic008G083100--Sobic002G226200 Sobic004G255550 Sobic004G255550 Sobic008G083100--Sobic004G255550 Sobic001G001800 Sobic001G001800 Sobic004G033650--Sobic001G001800 Sobic004G033650--Sobic009G074800 Sobic004G033650--Sobic008G083100 Sobic004G033650--Sobic008G142200 Sobic004G033650--Sobic009G026700 Sobic004G033650--Sobic001G191500 Sobic007G141900 Sobic007G141900 Sobic004G033650--Sobic007G141900 Sobic004G033650--Sobic008G190600 Sobic004G118000 Sobic004G118000 Sobic004G033650--Sobic004G118000 Sobic009G074800--Sobic008G190600 Sobic009G074800--Sobic009G026700 Sobic009G074800--Sobic004G033650 Sobic009G074800--Sobic008G083100 Sobic003G272000 Sobic003G272000 Sobic009G074800--Sobic003G272000 Sobic009G074800--Sobic006G072701 Sobic009G074800--Sobic001G250750 Sobic009G074800--Sobic001G001800 Sobic003G375500 Sobic003G375500 Sobic009G074800--Sobic003G375500
Octagon: transcription factors


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