Gene annotation
Transcriptome id Sobic.001G288500.1
Synonym RFC3, EMB2775, EMB251, EMB161
Functional annotation expressed protein
UniProt A0A1Z5S8C0
Pfam -
Panther DB PTHR11669 PTHR11669:SF13
NCBI CDD KOG2035; Replication factor C, subunit RFC3
KEGG Orthology K10756; replication factor C subunit 3/5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27740 : ATPase family associated with various cellular activities (AAA)
RAP-DB (Rice) LOC_Os10g42400.1 : expressed protein
MaizeGDB (Corn) Zm00025a003473
Brachypodium KQJ97924
Barley HORVU1Hr1G050450.9 , HORVU1Hr1G050450.8 , HORVU1Hr1G050450.5 , HORVU1Hr1G050450.4 , HORVU1Hr1G050450.7 , HORVU1Hr1G050450.6 , HORVU1Hr1G050450.1 , HORVU1Hr1G050450.3 , HORVU1Hr1G050450.2 , HORVU1Hr1G050450.24 , HORVU1Hr1G050450.25 , HORVU1Hr1G050450.26 , HORVU1Hr1G050450.27 , HORVU1Hr1G050450.20 , HORVU1Hr1G050450.21 , HORVU1Hr1G050450.22 , HORVU1Hr1G050450.23 , HORVU1Hr1G050450.19 , HORVU1Hr1G050450.18 , HORVU1Hr1G050450.11 , HORVU1Hr1G050450.10 , HORVU1Hr1G050450.13 , HORVU1Hr1G050450.12 , HORVU1Hr1G050450.15 , HORVU1Hr1G050450.14 , HORVU1Hr1G050450.17 , HORVU1Hr1G050450.16
Wheat TraesCS1B02G207600 , TraesCSU02G140700 , TraesCS1A02G192700 , TraesCS1D02G196000 , TraesCS1B02G064900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G199601 - -
2 Sobic.005G110517 - -
3 Sobic.008G053500 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
4 Sobic.010G167700 receptor-like protein kinase 5 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
5 Sobic.003G012750 - -
6 Sobic.010G055900 - -
7 Sobic.010G025600 OsWAK112d - OsWAK receptor-like protein kinase, expressed -
8 Sobic.003G411150 - -
9 Sobic.010G127700 - -
10 Sobic.001G251750 - K03935: NADH dehydrogenase (ubiquinone) Fe-S protein 2
11 Sobic.001G325100 DUF623 domain containing protein, expressed -
12 Sobic.002G365200 - -
13 Sobic.003G301050 - -
14 Sobic.003G068200 receptor kinase, putative, expressed -
15 Sobic.003G229650 - -
16 Sobic.004G140900 - -
17 Sobic.001G279800 lecithin cholesterol acyltransferase, putative, expressed -
18 Sobic.010G045966 - -
19 Sobic.001G325500 expressed protein -
20 Sobic.002G321200 vrga1, putative, expressed -


Gene co-expression network
sample Sobic001G288500 Sobic001G288500 Sobic006G199601 Sobic006G199601 Sobic001G288500--Sobic006G199601 Sobic005G110517 Sobic005G110517 Sobic001G288500--Sobic005G110517 Sobic008G053500 Sobic008G053500 Sobic001G288500--Sobic008G053500 Sobic010G167700 Sobic010G167700 Sobic001G288500--Sobic010G167700 Sobic003G012750 Sobic003G012750 Sobic001G288500--Sobic003G012750 Sobic010G055900 Sobic010G055900 Sobic001G288500--Sobic010G055900 Sobic010G025600 Sobic010G025600 Sobic001G288500--Sobic010G025600 Sobic003G411150 Sobic003G411150 Sobic001G288500--Sobic003G411150 Sobic010G127700 Sobic010G127700 Sobic001G288500--Sobic010G127700 Sobic006G199601--Sobic005G110517 Sobic006G199601--Sobic001G288500 Sobic006G199601--Sobic008G053500 Sobic006G199601--Sobic003G012750 Sobic001G325100 Sobic001G325100 Sobic006G199601--Sobic001G325100 Sobic006G199601--Sobic010G055900 Sobic006G199601--Sobic010G025600 Sobic006G199601--Sobic010G167700 Sobic006G199601--Sobic010G127700 Sobic005G110517--Sobic006G199601 Sobic005G110517--Sobic001G288500 Sobic005G110517--Sobic010G025600 Sobic005G110517--Sobic003G012750 Sobic005G110517--Sobic010G167700 Sobic003G229650 Sobic003G229650 Sobic005G110517--Sobic003G229650 Sobic005G110517--Sobic008G053500 Sobic005G110517--Sobic010G127700 Sobic005G110517--Sobic003G411150 Sobic002G365200 Sobic002G365200 Sobic008G053500--Sobic002G365200 Sobic008G053500--Sobic006G199601 Sobic008G053500--Sobic001G325100 Sobic010G045966 Sobic010G045966 Sobic008G053500--Sobic010G045966 Sobic008G053500--Sobic003G012750 Sobic002G074700 Sobic002G074700 Sobic008G053500--Sobic002G074700 Sobic008G053500--Sobic010G025600 Sobic008G053500--Sobic001G288500 Sobic008G138850 Sobic008G138850 Sobic008G053500--Sobic008G138850 Sobic003G301050 Sobic003G301050 Sobic010G167700--Sobic003G301050 Sobic010G167700--Sobic003G411150 Sobic010G167700--Sobic005G110517 Sobic010G167700--Sobic006G199601 Sobic010G167700--Sobic001G288500 SobicK043600 SobicK043600 Sobic010G167700--SobicK043600 Sobic001G251750 Sobic001G251750 Sobic010G167700--Sobic001G251750 Sobic010G124100 Sobic010G124100 Sobic010G167700--Sobic010G124100 Sobic010G167700--Sobic003G012750 Sobic003G012750--Sobic010G025600 Sobic003G012750--Sobic006G199601 Sobic003G012750--Sobic008G053500 Sobic003G012750--Sobic005G110517 Sobic003G012750--Sobic002G365200 Sobic004G140900 Sobic004G140900 Sobic003G012750--Sobic004G140900 Sobic003G012750--Sobic001G288500 Sobic003G012750--Sobic010G167700 Sobic003G012750--Sobic001G251750 Sobic010G055900--Sobic006G199601 Sobic003G441301 Sobic003G441301 Sobic010G055900--Sobic003G441301 Sobic010G055900--Sobic001G325100 Sobic010G055900--Sobic008G053500 Sobic010G055900--Sobic008G138850 Sobic010G055900--Sobic001G288500 Sobic001G279800 Sobic001G279800 Sobic010G055900--Sobic001G279800 Sobic003G068200 Sobic003G068200 Sobic010G055900--Sobic003G068200 Sobic003G270650 Sobic003G270650 Sobic010G055900--Sobic003G270650 Sobic010G025600--Sobic003G012750 Sobic010G025600--Sobic005G110517 Sobic010G025600--Sobic003G229650 Sobic010G025600--Sobic006G199601 Sobic010G025600--Sobic008G053500 Sobic010G025600--Sobic004G140900 Sobic005G150700 Sobic005G150700 Sobic010G025600--Sobic005G150700 Sobic001G325500 Sobic001G325500 Sobic010G025600--Sobic001G325500 Sobic001G144100 Sobic001G144100 Sobic010G025600--Sobic001G144100 Sobic003G411150--Sobic010G167700 Sobic003G411150--Sobic005G110517 Sobic003G411150--Sobic001G288500 Sobic003G411150--Sobic003G301050 Sobic006G099400 Sobic006G099400 Sobic003G411150--Sobic006G099400 Sobic003G411150--Sobic006G199601 Sobic003G411150--Sobic010G055900 Sobic003G411150--Sobic010G124100 Sobic001G527550 Sobic001G527550 Sobic003G411150--Sobic001G527550 Sobic010G127700--Sobic006G199601 Sobic010G127700--Sobic005G110517 Sobic010G127700--Sobic008G053500 Sobic010G127700--Sobic010G025600 Sobic010G127700--Sobic001G288500 Sobic010G127700--Sobic001G325500 Sobic010G127700--Sobic010G045966 Sobic010G127700--Sobic003G012750 Sobic010G127700--Sobic001G325100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.