Gene annotation
Transcriptome id Sobic.001G383800.1
Synonym Sb01g036390, CML42
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsCML27 - Calmodulin-related calcium sensor protein, expressed
UniProt C5X1N3
Pfam PF13499 PF13405
Panther DB PTHR10891 PTHR10891:SF602
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G20780 : calmodulin like 42
RAP-DB (Rice) LOC_Os03g21380.1 : OsCML27 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a052447 , Zm00025a002314
Brachypodium KQK02910 , KQK21847
Barley HORVU4Hr1G050990.1 , HORVU4Hr1G050990.2
Wheat -
Populus -


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cDNA sequences
Sobic.001G383800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G039501 - -
2 Sobic.008G146000 - -
3 Sobic.002G150100 hypothetical protein -
4 Sobic.002G150100 hypothetical protein -
5 Sobic.002G150100 hypothetical protein -
6 Sobic.003G344050 - -
7 Sobic.002G220800 expressed protein -
8 Sobic.007G108200 - -
9 Sobic.003G249050 - -
10 Sobic.004G061701 - -
11 Sobic.004G023500 GATA zinc finger domain containing protein, expressed -
12 Sobic.009G099400 peptidase, T1 family, putative, expressed -
13 Sobic.002G195500 Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed -
14 Sobic.008G157800 BURP domain containing protein, expressed -
15 Sobic.009G008701 - K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
16 Sobic.002G150301 - -
17 Sobic.007G065900 Cupin domain containing protein, expressed -
18 Sobic.002G130601 - -
19 Sobic.005G217300 expressed protein -
20 Sobic.008G122200 expressed protein -


Gene co-expression network
sample Sobic001G383800 Sobic001G383800 Sobic008G039501 Sobic008G039501 Sobic001G383800--Sobic008G039501 Sobic008G146000 Sobic008G146000 Sobic001G383800--Sobic008G146000 Sobic002G150100 Sobic002G150100 Sobic001G383800--Sobic002G150100 Sobic003G344050 Sobic003G344050 Sobic001G383800--Sobic003G344050 Sobic002G220800 Sobic002G220800 Sobic001G383800--Sobic002G220800 Sobic007G108200 Sobic007G108200 Sobic001G383800--Sobic007G108200 Sobic003G249050 Sobic003G249050 Sobic001G383800--Sobic003G249050 Sobic008G039501--Sobic002G150100 Sobic008G039501--Sobic003G344050 Sobic004G061701 Sobic004G061701 Sobic008G039501--Sobic004G061701 Sobic008G039501--Sobic002G220800 Sobic008G039501--Sobic007G108200 Sobic008G039501--Sobic003G249050 Sobic004G023500 Sobic004G023500 Sobic008G039501--Sobic004G023500 Sobic008G146000--Sobic002G150100 Sobic008G146000--Sobic003G344050 Sobic008G146000--Sobic002G220800 Sobic008G146000--Sobic007G108200 Sobic008G146000--Sobic003G249050 Sobic008G146000--Sobic008G039501 Sobic008G146000--Sobic004G061701 Sobic002G150100--Sobic002G150100 Sobic002G150100--Sobic003G344050 Sobic002G150100--Sobic002G220800 Sobic002G150100--Sobic007G108200 Sobic002G150100--Sobic003G249050 Sobic002G150100--Sobic004G061701 Sobic002G150100--Sobic008G039501 Sobic002G150100--Sobic004G023500 Sobic003G344050--Sobic002G150100 Sobic003G344050--Sobic002G220800 Sobic003G344050--Sobic007G108200 Sobic003G344050--Sobic003G249050 Sobic003G344050--Sobic004G061701 Sobic003G344050--Sobic008G039501 Sobic003G344050--Sobic004G023500 Sobic002G220800--Sobic002G150100 Sobic002G220800--Sobic003G344050 Sobic002G220800--Sobic007G108200 Sobic002G220800--Sobic003G249050 Sobic002G220800--Sobic004G061701 Sobic002G220800--Sobic008G039501 Sobic002G220800--Sobic004G023500 Sobic007G108200--Sobic002G150100 Sobic007G108200--Sobic003G344050 Sobic007G108200--Sobic002G220800 Sobic007G108200--Sobic003G249050 Sobic007G108200--Sobic004G061701 Sobic007G108200--Sobic008G039501 Sobic007G108200--Sobic004G023500 Sobic003G249050--Sobic002G150100 Sobic003G249050--Sobic003G344050 Sobic003G249050--Sobic002G220800 Sobic003G249050--Sobic007G108200 Sobic003G249050--Sobic008G039501 Sobic003G249050--Sobic004G061701 Sobic003G249050--Sobic004G023500
Octagon: transcription factors


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