Gene annotation
Transcriptome id Sobic.002G195500.1
Synonym ATCAD2, Sb02g024200, CAD2, SbCAD8-3
Functional annotation Cinnamyl alcohol dehydrogenase (PubMedID : 19087955)
dehydrogenase, putative, expressed
UniProt C5XC50
Pfam PF08240
Panther DB PTHR11695 PTHR11695:SF563
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G21730 : cinnamyl alcohol dehydrogenase homolog 2
RAP-DB (Rice) LOC_Os09g23560.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a046898
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G150100 hypothetical protein -
2 Sobic.002G150100 hypothetical protein -
3 Sobic.002G150100 hypothetical protein -
4 Sobic.003G344050 - -
5 Sobic.002G220800 expressed protein -
6 Sobic.007G108200 - -
7 Sobic.003G249050 - -
8 Sobic.004G061701 - -
9 Sobic.008G039501 - -
10 Sobic.009G008701 - K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
11 Sobic.004G023500 GATA zinc finger domain containing protein, expressed -
12 Sobic.009G099400 peptidase, T1 family, putative, expressed -
13 Sobic.008G146000 - -
14 Sobic.008G157800 BURP domain containing protein, expressed -
15 Sobic.001G253000 - -
16 Sobic.005G217300 expressed protein -
17 Sobic.002G150301 - -
18 Sobic.007G065900 Cupin domain containing protein, expressed -
19 Sobic.001G348500 expressed protein -
20 Sobic.007G065800 Cupin domain containing protein, expressed -


Gene co-expression network
sample Sobic002G195500 Sobic002G195500 Sobic002G150100 Sobic002G150100 Sobic002G195500--Sobic002G150100 Sobic003G344050 Sobic003G344050 Sobic002G195500--Sobic003G344050 Sobic002G220800 Sobic002G220800 Sobic002G195500--Sobic002G220800 Sobic007G108200 Sobic007G108200 Sobic002G195500--Sobic007G108200 Sobic003G249050 Sobic003G249050 Sobic002G195500--Sobic003G249050 Sobic004G061701 Sobic004G061701 Sobic002G195500--Sobic004G061701 Sobic008G039501 Sobic008G039501 Sobic002G195500--Sobic008G039501 Sobic002G150100--Sobic002G150100 Sobic002G150100--Sobic003G344050 Sobic002G150100--Sobic002G220800 Sobic002G150100--Sobic007G108200 Sobic002G150100--Sobic003G249050 Sobic002G150100--Sobic004G061701 Sobic002G150100--Sobic008G039501 Sobic004G023500 Sobic004G023500 Sobic002G150100--Sobic004G023500 Sobic003G344050--Sobic002G150100 Sobic003G344050--Sobic002G220800 Sobic003G344050--Sobic007G108200 Sobic003G344050--Sobic003G249050 Sobic003G344050--Sobic004G061701 Sobic003G344050--Sobic008G039501 Sobic003G344050--Sobic004G023500 Sobic002G220800--Sobic002G150100 Sobic002G220800--Sobic003G344050 Sobic002G220800--Sobic007G108200 Sobic002G220800--Sobic003G249050 Sobic002G220800--Sobic004G061701 Sobic002G220800--Sobic008G039501 Sobic002G220800--Sobic004G023500 Sobic007G108200--Sobic002G150100 Sobic007G108200--Sobic003G344050 Sobic007G108200--Sobic002G220800 Sobic007G108200--Sobic003G249050 Sobic007G108200--Sobic004G061701 Sobic007G108200--Sobic008G039501 Sobic007G108200--Sobic004G023500 Sobic003G249050--Sobic002G150100 Sobic003G249050--Sobic003G344050 Sobic003G249050--Sobic002G220800 Sobic003G249050--Sobic007G108200 Sobic003G249050--Sobic008G039501 Sobic003G249050--Sobic004G061701 Sobic003G249050--Sobic004G023500 Sobic004G061701--Sobic003G344050 Sobic004G061701--Sobic002G150100 Sobic004G061701--Sobic007G108200 Sobic004G061701--Sobic002G220800 Sobic004G061701--Sobic008G039501 Sobic004G061701--Sobic003G249050 Sobic008G157800 Sobic008G157800 Sobic004G061701--Sobic008G157800 Sobic008G039501--Sobic002G150100 Sobic008G039501--Sobic003G344050 Sobic008G039501--Sobic004G061701 Sobic008G039501--Sobic002G220800 Sobic008G039501--Sobic007G108200 Sobic008G039501--Sobic003G249050 Sobic008G039501--Sobic004G023500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.