Gene annotation
Transcriptome id Sobic.009G008701.1
Synonym -
Functional annotation -
UniProt C5YYE3
Pfam PF06331
Panther DB PTHR28580 PTHR28580:SF1
NCBI CDD KOG3451; Uncharacterized conserved protein
KEGG Orthology K10845; TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006289nucleotide-excision repair GO:0000439transcription factor TFIIH core complex


Orthologs (automatic annotation)
TAIR AT1G12400 : Nucleotide excision repair, TFIIH, subunit TTDA
RAP-DB (Rice) LOC_Os07g38600.1 : REX1 DNA Repair family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G150100 hypothetical protein -
2 Sobic.002G150100 hypothetical protein -
3 Sobic.002G150100 hypothetical protein -
4 Sobic.003G344050 - -
5 Sobic.002G220800 expressed protein -
6 Sobic.007G108200 - -
7 Sobic.003G249050 - -
8 Sobic.002G195500 Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed -
9 Sobic.004G061701 - -
10 Sobic.008G039501 - -
11 Sobic.009G099400 peptidase, T1 family, putative, expressed -
12 Sobic.004G023500 GATA zinc finger domain containing protein, expressed -
13 Sobic.008G146000 - -
14 Sobic.008G157800 BURP domain containing protein, expressed -
15 Sobic.002G150301 - -
16 Sobic.008G186800 expressed protein -
17 Sobic.007G065900 Cupin domain containing protein, expressed -
18 Sobic.001G253000 - -
19 Sobic.007G065800 Cupin domain containing protein, expressed -
20 Sobic.005G217300 expressed protein -


Gene co-expression network
sample Sobic009G008701 Sobic009G008701 Sobic002G150100 Sobic002G150100 Sobic009G008701--Sobic002G150100 Sobic003G344050 Sobic003G344050 Sobic009G008701--Sobic003G344050 Sobic002G220800 Sobic002G220800 Sobic009G008701--Sobic002G220800 Sobic007G108200 Sobic007G108200 Sobic009G008701--Sobic007G108200 Sobic003G249050 Sobic003G249050 Sobic009G008701--Sobic003G249050 Sobic002G195500 Sobic002G195500 Sobic009G008701--Sobic002G195500 Sobic004G061701 Sobic004G061701 Sobic009G008701--Sobic004G061701 Sobic002G150100--Sobic002G150100 Sobic002G150100--Sobic003G344050 Sobic002G150100--Sobic002G220800 Sobic002G150100--Sobic007G108200 Sobic002G150100--Sobic003G249050 Sobic002G150100--Sobic004G061701 Sobic008G039501 Sobic008G039501 Sobic002G150100--Sobic008G039501 Sobic004G023500 Sobic004G023500 Sobic002G150100--Sobic004G023500 Sobic003G344050--Sobic002G150100 Sobic003G344050--Sobic002G220800 Sobic003G344050--Sobic007G108200 Sobic003G344050--Sobic003G249050 Sobic003G344050--Sobic004G061701 Sobic003G344050--Sobic008G039501 Sobic003G344050--Sobic004G023500 Sobic002G220800--Sobic002G150100 Sobic002G220800--Sobic003G344050 Sobic002G220800--Sobic007G108200 Sobic002G220800--Sobic003G249050 Sobic002G220800--Sobic004G061701 Sobic002G220800--Sobic008G039501 Sobic002G220800--Sobic004G023500 Sobic007G108200--Sobic002G150100 Sobic007G108200--Sobic003G344050 Sobic007G108200--Sobic002G220800 Sobic007G108200--Sobic003G249050 Sobic007G108200--Sobic004G061701 Sobic007G108200--Sobic008G039501 Sobic007G108200--Sobic004G023500 Sobic003G249050--Sobic002G150100 Sobic003G249050--Sobic003G344050 Sobic003G249050--Sobic002G220800 Sobic003G249050--Sobic007G108200 Sobic003G249050--Sobic008G039501 Sobic003G249050--Sobic004G061701 Sobic003G249050--Sobic004G023500 Sobic002G195500--Sobic002G150100 Sobic002G195500--Sobic003G344050 Sobic002G195500--Sobic002G220800 Sobic002G195500--Sobic007G108200 Sobic002G195500--Sobic003G249050 Sobic002G195500--Sobic004G061701 Sobic002G195500--Sobic008G039501 Sobic004G061701--Sobic003G344050 Sobic004G061701--Sobic002G150100 Sobic004G061701--Sobic007G108200 Sobic004G061701--Sobic002G220800 Sobic004G061701--Sobic008G039501 Sobic004G061701--Sobic003G249050 Sobic008G157800 Sobic008G157800 Sobic004G061701--Sobic008G157800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.