Gene annotation
Transcriptome id Sobic.002G022000.1
Synonym Sb02g002025
Functional annotation OsFBX212 - F-box domain containing protein, expressed
UniProt A0A1W0W214
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF100
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17530 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os07g03100.2 : OsFBX212 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ93971 , KQK02397
Barley HORVU6Hr1G082260.2 , HORVU6Hr1G082260.3 , HORVU6Hr1G082260.1 , HORVU6Hr1G082260.6 , HORVU6Hr1G082260.4 , HORVU6Hr1G082260.5 , HORVU5Hr1G119360.1
Wheat TraesCS4A02G215800 , TraesCS4A02G348200 , TraesCS4A02G021200 , TraesCSU02G142000 , TraesCS5B02G524800 , TraesCS6A02G341000 , TraesCS7B02G077900 , TraesCS1B02G390900 , TraesCS1B02G390900
Populus -


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cDNA sequences
Sobic.002G022000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -
2 Sobic.002G099866 - -
3 Sobic.001G264600 - -
4 Sobic.007G086701 - -
5 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
6 Sobic.009G056900 acetyltransferase, GNAT family protein, expressed -
7 Sobic.006G062600 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
8 Sobic.001G261529 - -
9 Sobic.006G018751 - -
10 Sobic.004G322901 - -
11 Sobic.002G066700 OsFBL33 - F-box domain and LRR containing protein, expressed -
12 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
13 Sobic.001G392700 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
14 Sobic.001G261250 - -
15 Sobic.004G340566 - -
16 Sobic.001G509100 expressed protein -
17 Sobic.002G174500 OsFBX252 - F-box domain containing protein, expressed -
18 Sobic.005G083280 - -
19 Sobic.003G167200 - -
20 Sobic.005G206800 expressed protein -


Gene co-expression network
sample Sobic002G022000 Sobic002G022000 Sobic009G132400 Sobic009G132400 Sobic002G022000--Sobic009G132400 Sobic002G099866 Sobic002G099866 Sobic002G022000--Sobic002G099866 Sobic001G264600 Sobic001G264600 Sobic002G022000--Sobic001G264600 Sobic007G086701 Sobic007G086701 Sobic002G022000--Sobic007G086701 Sobic002G266600 Sobic002G266600 Sobic002G022000--Sobic002G266600 Sobic009G056900 Sobic009G056900 Sobic002G022000--Sobic009G056900 Sobic006G062600 Sobic006G062600 Sobic002G022000--Sobic006G062600 Sobic001G261529 Sobic001G261529 Sobic002G022000--Sobic001G261529 Sobic006G018751 Sobic006G018751 Sobic002G022000--Sobic006G018751 Sobic009G132400--Sobic002G099866 Sobic009G132400--Sobic002G266600 Sobic001G509100 Sobic001G509100 Sobic009G132400--Sobic001G509100 Sobic004G340566 Sobic004G340566 Sobic009G132400--Sobic004G340566 Sobic003G167200 Sobic003G167200 Sobic009G132400--Sobic003G167200 Sobic009G132400--Sobic001G264600 Sobic009G132400--Sobic001G261529 Sobic003G035001 Sobic003G035001 Sobic009G132400--Sobic003G035001 Sobic001G324800 Sobic001G324800 Sobic009G132400--Sobic001G324800 Sobic002G099866--Sobic002G266600 Sobic002G099866--Sobic001G509100 Sobic002G099866--Sobic009G132400 Sobic002G099866--Sobic001G264600 Sobic002G099866--Sobic003G167200 Sobic002G099866--Sobic001G261529 Sobic002G099866--Sobic003G035001 Sobic002G015800 Sobic002G015800 Sobic002G099866--Sobic002G015800 Sobic002G099866--Sobic007G086701 Sobic001G264600--Sobic007G086701 Sobic001G264600--Sobic002G266600 Sobic001G264600--Sobic006G018751 Sobic001G264600--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic001G264600--Sobic005G083280 Sobic001G264600--Sobic002G099866 Sobic002G066700 Sobic002G066700 Sobic001G264600--Sobic002G066700 Sobic004G322901 Sobic004G322901 Sobic001G264600--Sobic004G322901 Sobic001G264600--Sobic003G167200 Sobic007G086701--Sobic006G018751 Sobic007G086701--Sobic001G264600 Sobic007G086701--Sobic002G266600 Sobic010G207900 Sobic010G207900 Sobic007G086701--Sobic010G207900 Sobic007G086701--Sobic001G261529 Sobic007G086701--Sobic002G066700 Sobic007G086701--Sobic005G083280 Sobic007G086701--Sobic004G322901 Sobic007G086701--Sobic002G099866 Sobic002G266600--Sobic001G264600 Sobic002G266600--Sobic002G099866 Sobic002G266600--Sobic003G167200 Sobic002G266600--Sobic007G086701 Sobic002G266600--Sobic001G261529 Sobic002G266600--Sobic003G035001 Sobic002G266600--Sobic002G066700 Sobic002G266600--Sobic006G018751 Sobic002G266600--Sobic005G083280 Sobic009G056900--Sobic002G066700 Sobic001G392700 Sobic001G392700 Sobic009G056900--Sobic001G392700 Sobic002G147400 Sobic002G147400 Sobic009G056900--Sobic002G147400 Sobic001G075201 Sobic001G075201 Sobic009G056900--Sobic001G075201 Sobic005G201200 Sobic005G201200 Sobic009G056900--Sobic005G201200 Sobic006G038700 Sobic006G038700 Sobic009G056900--Sobic006G038700 Sobic002G016000 Sobic002G016000 Sobic009G056900--Sobic002G016000 Sobic009G056900--Sobic002G266600 Sobic009G056900--Sobic003G167200 Sobic006G062600--Sobic001G392700 Sobic006G062600--Sobic009G056900 Sobic001G075200 Sobic001G075200 Sobic006G062600--Sobic001G075200 Sobic007G068200 Sobic007G068200 Sobic006G062600--Sobic007G068200 Sobic006G062600--Sobic002G147400 Sobic006G062600--Sobic002G066700 Sobic006G062600--Sobic010G207900 Sobic006G062600--Sobic001G075201 Sobic006G062600--Sobic007G086701 Sobic001G261529--Sobic005G083280 Sobic001G261529--Sobic004G322901 Sobic001G261529--Sobic001G264600 Sobic003G092600 Sobic003G092600 Sobic001G261529--Sobic003G092600 Sobic001G261529--Sobic002G015800 Sobic001G261529--Sobic002G266600 Sobic001G261529--Sobic007G086701 Sobic001G261529--Sobic006G018751 Sobic001G261529--Sobic002G099866 Sobic006G018751--Sobic007G086701 Sobic006G018751--Sobic010G207900 Sobic006G018751--Sobic001G264600 Sobic006G018751--Sobic001G261529 Sobic006G018751--Sobic005G083280 Sobic007G126000 Sobic007G126000 Sobic006G018751--Sobic007G126000 Sobic006G018751--Sobic004G322901 Sobic006G018751--Sobic002G266600 Sobic006G018751--Sobic002G066700
Octagon: transcription factors


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