Gene annotation
Transcriptome id Sobic.002G207700.1
Synonym Sb02g025210
Functional annotation nodulin, putative, expressed
UniProt C5XCZ7
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT4G30420 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os09g25810.2 : nodulin, putative, expressed
MaizeGDB (Corn) Zm00025a047079
Brachypodium -
Barley HORVU5Hr1G064000.14 , HORVU5Hr1G064000.11 , HORVU5Hr1G064000.10 , HORVU5Hr1G064000.13 , HORVU5Hr1G064000.12 , HORVU5Hr1G064000.1 , HORVU5Hr1G064000.3 , HORVU5Hr1G064000.2 , HORVU5Hr1G064000.7 , HORVU5Hr1G064000.6
Wheat TraesCS5A02G220400 , TraesCS5D02G228400 , TraesCS5A02G220400 , TraesCS5A02G220400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G249600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.008G189500 similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed -
3 Sobic.001G068600 app1, putative, expressed -
4 Sobic.003G230900 function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
5 Sobic.001G472000 Polyamine oxidase 1("PubMedID : 26759170,PubMedID : 24597475")@amine oxidase, flavin-containing, domain containing protein, expressed K13366: MPAO, polyamine oxidase
6 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
7 Sobic.006G227000 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
8 Sobic.002G311700 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
9 Sobic.001G249500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.007G069500 expressed protein -
11 Sobic.001G363700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.005G029400 strictosidine synthase, putative, expressed -
13 Sobic.006G175700 down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed -
14 Sobic.006G253900 absent or strongly suppressed during the accumulation of 3-deoxyanthocyanidins(PubMedID : 20529887)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed K00475: naringenin 3-dioxygenase
15 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
16 Sobic.009G130600 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.008G030700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.007G131600 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.003G287000 BURP domain containing protein, expressed -
20 Sobic.002G278700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2


Gene co-expression network
sample Sobic002G207700 Sobic002G207700 Sobic001G249600 Sobic001G249600 Sobic002G207700--Sobic001G249600 Sobic008G189500 Sobic008G189500 Sobic002G207700--Sobic008G189500 Sobic001G068600 Sobic001G068600 Sobic002G207700--Sobic001G068600 Sobic003G230900 Sobic003G230900 Sobic002G207700--Sobic003G230900 Sobic001G472000 Sobic001G472000 Sobic002G207700--Sobic001G472000 Sobic003G007800 Sobic003G007800 Sobic002G207700--Sobic003G007800 Sobic006G227000 Sobic006G227000 Sobic002G207700--Sobic006G227000 Sobic002G311700 Sobic002G311700 Sobic002G207700--Sobic002G311700 Sobic001G249500 Sobic001G249500 Sobic002G207700--Sobic001G249500 Sobic001G249600--Sobic003G230900 Sobic001G249600--Sobic006G227000 Sobic001G249600--Sobic001G249500 Sobic002G128600 Sobic002G128600 Sobic001G249600--Sobic002G128600 Sobic004G000700 Sobic004G000700 Sobic001G249600--Sobic004G000700 Sobic006G253900 Sobic006G253900 Sobic001G249600--Sobic006G253900 Sobic005G190800 Sobic005G190800 Sobic001G249600--Sobic005G190800 Sobic006G175700 Sobic006G175700 Sobic001G249600--Sobic006G175700 Sobic007G069500 Sobic007G069500 Sobic001G249600--Sobic007G069500 Sobic008G189500--Sobic003G007800 Sobic008G189500--Sobic001G472000 Sobic001G255300 Sobic001G255300 Sobic008G189500--Sobic001G255300 Sobic005G029400 Sobic005G029400 Sobic008G189500--Sobic005G029400 Sobic009G070600 Sobic009G070600 Sobic008G189500--Sobic009G070600 Sobic004G328900 Sobic004G328900 Sobic008G189500--Sobic004G328900 Sobic003G317800 Sobic003G317800 Sobic008G189500--Sobic003G317800 Sobic001G379300 Sobic001G379300 Sobic008G189500--Sobic001G379300 Sobic008G189500--Sobic002G128600 Sobic004G335500 Sobic004G335500 Sobic001G068600--Sobic004G335500 Sobic001G068600--Sobic008G189500 Sobic001G068600--Sobic003G007800 Sobic001G068600--Sobic006G175700 Sobic001G363700 Sobic001G363700 Sobic001G068600--Sobic001G363700 Sobic001G068600--Sobic005G029400 Sobic008G030700 Sobic008G030700 Sobic001G068600--Sobic008G030700 Sobic001G068600--Sobic005G190800 Sobic001G068600--Sobic002G128600 Sobic003G230900--Sobic001G249600 Sobic003G230900--Sobic004G000700 Sobic003G230900--Sobic006G227000 Sobic003G230900--Sobic001G249500 Sobic003G230900--Sobic002G128600 Sobic003G230900--Sobic006G253900 Sobic003G230900--Sobic008G030700 Sobic003G230900--Sobic006G175700 Sobic003G230900--Sobic005G190800 Sobic001G472000--Sobic008G189500 Sobic001G472000--Sobic003G007800 Sobic001G472000--Sobic005G029400 Sobic009G161100 Sobic009G161100 Sobic001G472000--Sobic009G161100 Sobic001G472000--Sobic009G070600 Sobic001G472000--Sobic001G255300 Sobic001G315200 Sobic001G315200 Sobic001G472000--Sobic001G315200 Sobic001G541300 Sobic001G541300 Sobic001G472000--Sobic001G541300 Sobic004G249400 Sobic004G249400 Sobic001G472000--Sobic004G249400 Sobic003G007800--Sobic008G189500 Sobic003G007800--Sobic001G255300 Sobic003G007800--Sobic005G190800 Sobic003G007800--Sobic006G175700 Sobic003G007800--Sobic004G328900 Sobic003G007800--Sobic003G317800 Sobic003G007800--Sobic002G128600 Sobic003G007800--Sobic005G029400 Sobic004G038300 Sobic004G038300 Sobic003G007800--Sobic004G038300 Sobic006G227000--Sobic002G128600 Sobic006G227000--Sobic001G249500 Sobic006G227000--Sobic007G069500 Sobic006G227000--Sobic001G249600 Sobic006G227000--Sobic006G253900 Sobic006G227000--Sobic005G190800 Sobic006G227000--Sobic006G175700 Sobic006G227000--Sobic003G317800 Sobic006G227000--Sobic003G230900 Sobic008G142400 Sobic008G142400 Sobic002G311700--Sobic008G142400 Sobic002G311700--Sobic006G253900 Sobic009G196001 Sobic009G196001 Sobic002G311700--Sobic009G196001 Sobic002G311700--Sobic007G069500 Sobic002G311700--Sobic006G227000 Sobic009G206000 Sobic009G206000 Sobic002G311700--Sobic009G206000 Sobic007G181000 Sobic007G181000 Sobic002G311700--Sobic007G181000 Sobic002G311700--Sobic002G128600 Sobic010G120200 Sobic010G120200 Sobic002G311700--Sobic010G120200 Sobic001G249500--Sobic006G227000 Sobic001G249500--Sobic002G128600 Sobic001G249500--Sobic006G175700 Sobic001G249500--Sobic008G030700 Sobic001G249500--Sobic005G190800 Sobic001G249500--Sobic001G249600 Sobic001G249500--Sobic007G069500 Sobic001G249500--Sobic003G007800 Sobic007G195300 Sobic007G195300 Sobic001G249500--Sobic007G195300
Octagon: transcription factors


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