Gene annotation
Transcriptome id Sobic.002G282800.1
Synonym ODC2, Ornithine decarboxylase, Sb02g031560
Functional annotation "Decreased expression levels by drought stress, up-regulated by silicon application under drought stress " (PubMedID : 24813726)
pyridoxal-dependent decarboxylase protein, putative, expressed
UniProt A0A1B6QDW3 , C6JSF7 , Q8LK51
Pfam PF00278 PF02784
Panther DB PTHR11482 PTHR11482:SF6
NCBI CDD KOG0622; Ornithine decarboxylase
KEGG Orthology K01581; E4.1.1.17, ODC1, speC, ornithine decarboxylase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT3G14390 : Pyridoxal-dependent decarboxylase family protein
RAP-DB (Rice) LOC_Os09g37120.1 : pyridoxal-dependent decarboxylase protein, putative, expressed
MaizeGDB (Corn) Zm00025a049288 , Zm00025a015760 , Zm00025a047826
Brachypodium KQJ91290 , KQJ91284 , PNT65044
Barley HORVU5Hr1G084750.3 , HORVU5Hr1G084750.1
Wheat TraesCS5B02G304100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G185000 - -
2 Sobic.001G090900 late embryogenesis abundant protein D-34, putative, expressed -
3 Sobic.005G102600 - -
4 Sobic.010G069700 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
5 Sobic.002G018250 - -
6 Sobic.002G089300 LTPL54 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
7 Sobic.002G141050 - -
8 Sobic.010G207450 - -
9 Sobic.005G029300 - -
10 Sobic.004G196900 - -
11 Sobic.001G185200 expressed protein -
12 Sobic.001G241000 late embryogenesis abundant protein D-34, putative, expressed -
13 Sobic.006G229400 PB1 domain containing protein, expressed -
14 Sobic.001G127600 ZOS3-15 - C2H2 zinc finger protein, expressed -
15 Sobic.001G122700 expressed protein -
16 Sobic.009G227300 "BG3(Ortholog in rice:Xiao et al., 2018)"(PubMedID : 31659926)@purine permease, putative, expressed -
17 Sobic.010G248150 - -
18 Sobic.002G243100 expressed protein -
19 Sobic.003G302466 - -
20 Sobic.001G203100 expressed protein -


Gene co-expression network
sample Sobic002G282800 Sobic002G282800 Sobic009G185000 Sobic009G185000 Sobic002G282800--Sobic009G185000 Sobic001G090900 Sobic001G090900 Sobic002G282800--Sobic001G090900 Sobic005G102600 Sobic005G102600 Sobic002G282800--Sobic005G102600 Sobic010G069700 Sobic010G069700 Sobic002G282800--Sobic010G069700 Sobic002G018250 Sobic002G018250 Sobic002G282800--Sobic002G018250 Sobic002G089300 Sobic002G089300 Sobic002G282800--Sobic002G089300 Sobic002G141050 Sobic002G141050 Sobic002G282800--Sobic002G141050 Sobic010G207450 Sobic010G207450 Sobic002G282800--Sobic010G207450 Sobic005G029300 Sobic005G029300 Sobic002G282800--Sobic005G029300 Sobic009G185000--Sobic002G282800 Sobic009G185000--Sobic001G090900 Sobic006G229400 Sobic006G229400 Sobic009G185000--Sobic006G229400 Sobic009G185000--Sobic002G089300 Sobic009G185000--Sobic005G102600 Sobic004G196900 Sobic004G196900 Sobic009G185000--Sobic004G196900 Sobic009G185000--Sobic005G029300 Sobic001G122700 Sobic001G122700 Sobic009G185000--Sobic001G122700 Sobic009G185000--Sobic002G141050 Sobic001G090900--Sobic009G185000 Sobic001G090900--Sobic002G282800 Sobic001G090900--Sobic004G196900 Sobic002G243100 Sobic002G243100 Sobic001G090900--Sobic002G243100 Sobic001G090900--Sobic005G102600 Sobic001G090900--Sobic002G089300 Sobic001G090900--Sobic006G229400 Sobic001G090900--Sobic005G029300 Sobic004G111500 Sobic004G111500 Sobic001G090900--Sobic004G111500 Sobic005G102600--Sobic001G122700 Sobic001G127600 Sobic001G127600 Sobic005G102600--Sobic001G127600 Sobic005G102600--Sobic009G185000 Sobic005G102600--Sobic002G282800 Sobic005G102600--Sobic002G018250 Sobic005G102600--Sobic010G207450 Sobic005G102600--Sobic002G089300 Sobic005G102600--Sobic001G090900 Sobic010G248150 Sobic010G248150 Sobic005G102600--Sobic010G248150 Sobic005G003001 Sobic005G003001 Sobic010G069700--Sobic005G003001 Sobic006G080200 Sobic006G080200 Sobic010G069700--Sobic006G080200 Sobic001G203100 Sobic001G203100 Sobic010G069700--Sobic001G203100 Sobic001G220600 Sobic001G220600 Sobic010G069700--Sobic001G220600 Sobic010G069700--Sobic002G282800 Sobic008G154400 Sobic008G154400 Sobic010G069700--Sobic008G154400 Sobic001G059800 Sobic001G059800 Sobic010G069700--Sobic001G059800 Sobic010G274300 Sobic010G274300 Sobic010G069700--Sobic010G274300 Sobic010G069700--Sobic002G018250 Sobic002G018250--Sobic010G207450 Sobic010G200100 Sobic010G200100 Sobic002G018250--Sobic010G200100 Sobic002G018250--Sobic001G220600 Sobic002G018250--Sobic005G102600 Sobic002G018250--Sobic002G141050 Sobic002G018250--Sobic006G080200 Sobic002G059100 Sobic002G059100 Sobic002G018250--Sobic002G059100 Sobic002G018250--Sobic010G069700 Sobic002G018000 Sobic002G018000 Sobic002G018250--Sobic002G018000 Sobic002G089300--Sobic004G196900 Sobic002G089300--Sobic006G229400 Sobic001G379800 Sobic001G379800 Sobic002G089300--Sobic001G379800 Sobic004G196000 Sobic004G196000 Sobic002G089300--Sobic004G196000 Sobic001G450100 Sobic001G450100 Sobic002G089300--Sobic001G450100 Sobic003G389500 Sobic003G389500 Sobic002G089300--Sobic003G389500 Sobic003G063600 Sobic003G063600 Sobic002G089300--Sobic003G063600 Sobic002G089300--Sobic005G029300 Sobic006G236100 Sobic006G236100 Sobic002G089300--Sobic006G236100 Sobic002G141050--Sobic002G018250 Sobic002G141050--Sobic005G102600 Sobic002G141050--Sobic002G282800 Sobic002G141050--Sobic009G185000 Sobic002G141050--Sobic002G089300 Sobic002G141050--Sobic010G207450 Sobic002G141050--Sobic005G029300 Sobic002G141050--Sobic001G090900 Sobic002G141050--Sobic004G196900 Sobic010G207450--Sobic002G018250 Sobic010G207450--Sobic002G059100 Sobic003G048900 Sobic003G048900 Sobic010G207450--Sobic003G048900 Sobic010G207450--Sobic005G102600 Sobic010G207450--Sobic001G059800 Sobic002G320300 Sobic002G320300 Sobic010G207450--Sobic002G320300 Sobic010G207450--Sobic002G282800 Sobic001G297300 Sobic001G297300 Sobic010G207450--Sobic001G297300 Sobic010G200300 Sobic010G200300 Sobic010G207450--Sobic010G200300 Sobic005G029300--Sobic002G089300 Sobic005G029300--Sobic004G196900 Sobic005G029300--Sobic006G229400 Sobic005G029300--Sobic009G185000 Sobic005G029300--Sobic001G379800 Sobic005G029300--Sobic002G282800 Sobic005G029300--Sobic001G450100 Sobic005G029300--Sobic005G102600 Sobic005G029300--Sobic001G090900
Octagon: transcription factors


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