Gene annotation
Transcriptome id Sobic.003G138100.1
Synonym Sb03g011760
Functional annotation tetratricopeptide repeat, putative, expressed
UniProt C5XI02
Pfam PF15044
Panther DB PTHR12601
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52140 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os02g48620.1 : tetratricopeptide repeat, putative, expressed
MaizeGDB (Corn) Zm00025a032534 , Zm00025a021818
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
2 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
3 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
4 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
5 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
6 Sobic.009G241500 expressed protein -
7 Sobic.002G269032 - -
8 Sobic.004G052500 - -
9 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
10 Sobic.001G544000 nuclear transport factor, putative, expressed -
11 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.008G183300 thaumatin, putative, expressed -
13 Sobic.006G246200 protein kinase, putative, expressed -
14 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
15 Sobic.005G226100 ZOS11-10 - C2H2 zinc finger protein, expressed -
16 Sobic.006G113400 heavy metal associated domain containing protein, expressed -
17 Sobic.010G018300 expressed protein -
18 Sobic.002G241250 - -
19 Sobic.005G041000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
20 Sobic.005G082700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3


Gene co-expression network
sample Sobic003G138100 Sobic003G138100 Sobic001G259500 Sobic001G259500 Sobic003G138100--Sobic001G259500 Sobic009G241500 Sobic009G241500 Sobic003G138100--Sobic009G241500 Sobic002G269032 Sobic002G269032 Sobic003G138100--Sobic002G269032 Sobic004G052500 Sobic004G052500 Sobic003G138100--Sobic004G052500 Sobic001G146500 Sobic001G146500 Sobic003G138100--Sobic001G146500 Sobic001G259500--Sobic001G259500 Sobic001G259500--Sobic009G241500 Sobic001G259500--Sobic002G269032 Sobic001G259500--Sobic004G052500 Sobic001G259500--Sobic001G146500 Sobic001G259500--Sobic003G138100 Sobic008G181801 Sobic008G181801 Sobic009G241500--Sobic008G181801 Sobic005G082700 Sobic005G082700 Sobic009G241500--Sobic005G082700 Sobic005G226100 Sobic005G226100 Sobic009G241500--Sobic005G226100 Sobic006G246200 Sobic006G246200 Sobic009G241500--Sobic006G246200 Sobic009G241500--Sobic001G259500 Sobic002G269032--Sobic001G259500 Sobic003G037100 Sobic003G037100 Sobic002G269032--Sobic003G037100 Sobic002G269032--Sobic009G241500 Sobic002G269032--Sobic005G226100 Sobic002G268966 Sobic002G268966 Sobic002G269032--Sobic002G268966 Sobic008G183300 Sobic008G183300 Sobic004G052500--Sobic008G183300 Sobic004G052500--Sobic001G259500 Sobic001G018400 Sobic001G018400 Sobic004G052500--Sobic001G018400 Sobic004G052500--Sobic005G082700 Sobic004G052500--Sobic001G146500 Sobic001G146500--Sobic001G259500 Sobic010G018300 Sobic010G018300 Sobic001G146500--Sobic010G018300 Sobic002G241250 Sobic002G241250 Sobic001G146500--Sobic002G241250 Sobic001G146500--Sobic004G052500 Sobic001G146400 Sobic001G146400 Sobic001G146500--Sobic001G146400
Octagon: transcription factors


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