Gene annotation
Transcriptome id Sobic.003G237500.1
Synonym Sb03g029500, LSU3
Functional annotation UP-9A, putative, expressed
UniProt C5XF63
Pfam -
Panther DB PTHR34283
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24660 : response to low sulfur 2
RAP-DB (Rice) LOC_Os02g03710.1 : UP-9A, putative, expressed
MaizeGDB (Corn) Zm00025a018839
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G184650 - -
2 Sobic.005G048250 - -
3 Sobic.007G183100 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.009G053500 - -
5 Sobic.005G090600 peptide transporter PTR2, putative, expressed -
6 Sobic.001G494600 expressed protein -
7 Sobic.001G261750 - -
8 Sobic.001G261750 - -
9 Sobic.001G261750 - -
10 Sobic.001G261750 - -
11 Sobic.001G261750 - -
12 Sobic.003G184765 - -
13 Sobic.007G064800 "Production of (E)-b-caryophyllene, cytoplasm"(PubMedID : 21880075)@Protein terpene synthase 6 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
14 Sobic.002G093600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Jacalin-like lectin domain containing protein, putative, expressed -
15 Sobic.008G145200 aspartic proteinase nepenthesin precursor, putative, expressed -
16 Sobic.005G207000 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
17 Sobic.007G104000 Leucine Rich Repeat family protein, expressed -
18 Sobic.004G143801 - -
19 Sobic.002G391700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed K00430: peroxidase
20 Sobic.009G123800 josephin, putative, expressed K11863: ATXN3, Ataxin-3


Gene co-expression network
sample Sobic003G237500 Sobic003G237500 Sobic001G184650 Sobic001G184650 Sobic003G237500--Sobic001G184650 Sobic005G048250 Sobic005G048250 Sobic003G237500--Sobic005G048250 Sobic007G183100 Sobic007G183100 Sobic003G237500--Sobic007G183100 Sobic009G053500 Sobic009G053500 Sobic003G237500--Sobic009G053500 Sobic005G090600 Sobic005G090600 Sobic003G237500--Sobic005G090600 Sobic001G494600 Sobic001G494600 Sobic003G237500--Sobic001G494600 Sobic001G261750 Sobic001G261750 Sobic003G237500--Sobic001G261750 Sobic001G184650--Sobic001G261750 Sobic001G184650--Sobic001G494600 Sobic002G093600 Sobic002G093600 Sobic001G184650--Sobic002G093600 Sobic001G184650--Sobic003G237500 Sobic008G028533 Sobic008G028533 Sobic001G184650--Sobic008G028533 Sobic005G048250--Sobic001G261750 Sobic005G048250--Sobic001G494600 Sobic005G048250--Sobic008G028533 Sobic005G048250--Sobic002G093600 Sobic002G391700 Sobic002G391700 Sobic005G048250--Sobic002G391700 Sobic001G044800 Sobic001G044800 Sobic007G183100--Sobic001G044800 Sobic002G160600 Sobic002G160600 Sobic007G183100--Sobic002G160600 Sobic005G218500 Sobic005G218500 Sobic007G183100--Sobic005G218500 Sobic007G064800 Sobic007G064800 Sobic007G183100--Sobic007G064800 Sobic004G143801 Sobic004G143801 Sobic007G183100--Sobic004G143801 Sobic007G183100--Sobic001G494600 Sobic003G184765 Sobic003G184765 Sobic007G183100--Sobic003G184765 Sobic001G432500 Sobic001G432500 Sobic007G183100--Sobic001G432500 Sobic001G319350 Sobic001G319350 Sobic007G183100--Sobic001G319350 Sobic010G145650 Sobic010G145650 Sobic009G053500--Sobic010G145650 Sobic001G445850 Sobic001G445850 Sobic009G053500--Sobic001G445850 Sobic001G134800 Sobic001G134800 Sobic009G053500--Sobic001G134800 Sobic005G157733 Sobic005G157733 Sobic009G053500--Sobic005G157733 Sobic007G054100 Sobic007G054100 Sobic005G090600--Sobic007G054100 Sobic002G216500 Sobic002G216500 Sobic005G090600--Sobic002G216500 Sobic003G376200 Sobic003G376200 Sobic005G090600--Sobic003G376200 Sobic004G092000 Sobic004G092000 Sobic005G090600--Sobic004G092000 Sobic002G073900 Sobic002G073900 Sobic005G090600--Sobic002G073900 Sobic003G153800 Sobic003G153800 Sobic005G090600--Sobic003G153800 Sobic010G214200 Sobic010G214200 Sobic005G090600--Sobic010G214200 Sobic005G090600--Sobic005G218500 Sobic007G014600 Sobic007G014600 Sobic005G090600--Sobic007G014600 Sobic001G494600--Sobic001G261750 Sobic001G494600--Sobic002G093600 Sobic001G494600--Sobic008G028533 Sobic008G145200 Sobic008G145200 Sobic001G494600--Sobic008G145200 Sobic006G007300 Sobic006G007300 Sobic001G494600--Sobic006G007300 Sobic001G261750--Sobic001G261750 Sobic001G261750--Sobic001G494600 Sobic001G261750--Sobic002G093600 Sobic001G261750--Sobic008G028533 Sobic001G261750--Sobic008G145200 Sobic001G261750--Sobic006G007300
Octagon: transcription factors


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