Gene annotation
Transcriptome id Sobic.003G349100.1
Synonym Sb03g039210
Functional annotation plant-specific domain TIGR01589 family protein, expressed
UniProt C5XP36
Pfam PF09713
Panther DB PTHR31871 PTHR31871:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55240 : Plant protein 1589 of unknown function
RAP-DB (Rice) LOC_Os05g38680.1 : plant-specific domain TIGR01589 family protein, expressed
MaizeGDB (Corn) Zm00025a039698 , Zm00025a026945
Brachypodium KQK22287 , PNT77642
Barley HORVU3Hr1G087010.3 , HORVU3Hr1G087010.2 , HORVU3Hr1G087010.1
Wheat TraesCS3B02G388300 , TraesCS1B02G296600 , TraesCS4B02G202900 , TraesCS4B02G202900 , TraesCS1A02G287200 , TraesCS3D02G349400 , TraesCS1D02G286100 , TraesCS4D02G203800 , TraesCS3A02G355400 , TraesCS4A02G101700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G070700 Acid phosphatase class B family protein(PubMedID : 26320239)@HAD superfamily phosphatase, putative, expressed -
2 Sobic.002G207900 WAX2, putative, expressed -
3 Sobic.007G069500 expressed protein -
4 Sobic.009G070600 HAD superfamily phosphatase, putative, expressed -
5 Sobic.005G029400 strictosidine synthase, putative, expressed -
6 Sobic.001G255300 Protein tyrosine decarboxylase 4 (OS)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
7 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
8 Sobic.008G032701 - -
9 Sobic.001G363700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.007G146350 - -
11 Sobic.006G175700 down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed -
12 Sobic.006G227000 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
13 Sobic.003G317800 lysM domain containing protein, putative -
14 Sobic.003G287000 BURP domain containing protein, expressed -
15 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
16 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.004G038300 cycloartenol synthase, putative, expressed -
18 Sobic.008G189500 similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.005G190800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
20 Sobic.001G249500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic003G349100 Sobic003G349100 Sobic009G070700 Sobic009G070700 Sobic003G349100--Sobic009G070700 Sobic002G207900 Sobic002G207900 Sobic003G349100--Sobic002G207900 Sobic007G069500 Sobic007G069500 Sobic003G349100--Sobic007G069500 Sobic009G070600 Sobic009G070600 Sobic003G349100--Sobic009G070600 Sobic005G029400 Sobic005G029400 Sobic003G349100--Sobic005G029400 Sobic001G255300 Sobic001G255300 Sobic003G349100--Sobic001G255300 Sobic002G128600 Sobic002G128600 Sobic003G349100--Sobic002G128600 Sobic008G032701 Sobic008G032701 Sobic003G349100--Sobic008G032701 Sobic001G363700 Sobic001G363700 Sobic003G349100--Sobic001G363700 Sobic009G070700--Sobic009G070600 Sobic003G007800 Sobic003G007800 Sobic009G070700--Sobic003G007800 Sobic006G175700 Sobic006G175700 Sobic009G070700--Sobic006G175700 Sobic009G070700--Sobic001G255300 Sobic009G070700--Sobic005G029400 Sobic005G190800 Sobic005G190800 Sobic009G070700--Sobic005G190800 Sobic008G189500 Sobic008G189500 Sobic009G070700--Sobic008G189500 Sobic004G328900 Sobic004G328900 Sobic009G070700--Sobic004G328900 Sobic009G070700--Sobic002G128600 Sobic001G453200 Sobic001G453200 Sobic002G207900--Sobic001G453200 Sobic004G249400 Sobic004G249400 Sobic002G207900--Sobic004G249400 Sobic002G207900--Sobic001G255300 Sobic001G541300 Sobic001G541300 Sobic002G207900--Sobic001G541300 Sobic002G207900--Sobic005G029400 Sobic003G120500 Sobic003G120500 Sobic002G207900--Sobic003G120500 Sobic003G114200 Sobic003G114200 Sobic002G207900--Sobic003G114200 Sobic001G379300 Sobic001G379300 Sobic002G207900--Sobic001G379300 Sobic002G141100 Sobic002G141100 Sobic002G207900--Sobic002G141100 Sobic007G069500--Sobic002G128600 Sobic007G069500--Sobic001G379300 Sobic006G227000 Sobic006G227000 Sobic007G069500--Sobic006G227000 Sobic003G317800 Sobic003G317800 Sobic007G069500--Sobic003G317800 Sobic007G069500--Sobic001G255300 Sobic007G069500--Sobic005G029400 Sobic006G238100 Sobic006G238100 Sobic007G069500--Sobic006G238100 Sobic007G069500--Sobic004G328900 Sobic006G253900 Sobic006G253900 Sobic007G069500--Sobic006G253900 Sobic009G070600--Sobic009G070700 Sobic009G070600--Sobic001G255300 Sobic009G070600--Sobic005G029400 Sobic009G070600--Sobic008G189500 Sobic009G070600--Sobic003G007800 Sobic009G070600--Sobic004G328900 Sobic009G070600--Sobic002G207900 Sobic001G472000 Sobic001G472000 Sobic009G070600--Sobic001G472000 Sobic009G070600--Sobic001G379300 Sobic005G029400--Sobic008G189500 Sobic005G029400--Sobic001G255300 Sobic005G029400--Sobic009G070600 Sobic005G029400--Sobic003G007800 Sobic005G029400--Sobic001G379300 Sobic005G029400--Sobic007G069500 Sobic005G029400--Sobic002G128600 Sobic005G029400--Sobic003G317800 Sobic005G029400--Sobic004G328900 Sobic001G255300--Sobic001G379300 Sobic001G255300--Sobic004G328900 Sobic001G255300--Sobic006G238100 Sobic001G255300--Sobic003G317800 Sobic008G163200 Sobic008G163200 Sobic001G255300--Sobic008G163200 Sobic002G416950 Sobic002G416950 Sobic001G255300--Sobic002G416950 Sobic001G255300--Sobic003G007800 Sobic001G255300--Sobic008G189500 Sobic003G068300 Sobic003G068300 Sobic001G255300--Sobic003G068300 Sobic002G128600--Sobic006G227000 Sobic002G128600--Sobic003G317800 Sobic002G128600--Sobic007G069500 Sobic002G128600--Sobic005G190800 Sobic001G249500 Sobic001G249500 Sobic002G128600--Sobic001G249500 Sobic002G128600--Sobic004G328900 Sobic002G128600--Sobic001G379300 Sobic002G128600--Sobic001G255300 Sobic002G128600--Sobic003G007800 Sobic008G032701--Sobic007G069500 Sobic008G032701--Sobic002G207900 Sobic007G181000 Sobic007G181000 Sobic008G032701--Sobic007G181000 Sobic008G032701--Sobic001G255300 Sobic007G170800 Sobic007G170800 Sobic008G032701--Sobic007G170800 Sobic007G146350 Sobic007G146350 Sobic008G032701--Sobic007G146350 Sobic008G032701--Sobic001G363700 Sobic008G032701--Sobic003G114200 Sobic003G150600 Sobic003G150600 Sobic008G032701--Sobic003G150600 Sobic001G363700--Sobic008G189500 Sobic001G363700--Sobic005G029400 Sobic001G363700--Sobic002G128600 Sobic001G363700--Sobic007G146350 Sobic001G363700--Sobic003G007800 Sobic001G363700--Sobic002G207900 Sobic003G287000 Sobic003G287000 Sobic001G363700--Sobic003G287000 Sobic001G363700--Sobic001G249500 Sobic001G363700--Sobic001G255300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.