Gene annotation
Transcriptome id Sobic.003G395800.1
Synonym Sb03g043273
Functional annotation photosystem II 44 kDa reaction center protein, putative, expressed
UniProt A0A1B6Q7R5
Pfam PF00421
Panther DB PTHR33180 PTHR33180:SF4
NCBI CDD -
KEGG Orthology K02705; photosystem II CP43 chlorophyll apoprotein
Gene Ontology GO:0016168; chlorophyll binding GO:0016020membrane GO:0009767photosynthetic electron transport chain GO:0009521photosystem


Orthologs (automatic annotation)
TAIR ATCG00280 : photosystem II reaction center protein C
RAP-DB (Rice) LOC_Os10g21212.1 : photosystem II 44 kDa reaction center protein, putative, expressed
MaizeGDB (Corn) Zm00025a057596 , Zm00025a043566 , Zm00025a057683 , Zm00025a057681 , Zm00025a010036 , Zm00025a010040 , Zm00025a058110 , Zm00025a058078 , Zm00025a057878 , Zm00025a057699
Brachypodium PNT70439 , KQK20682 , KQJ90072 , KQK24086
Barley AGP50741 , HORVU4Hr1G066680.1 , HORVU5Hr1G082910.1 , HORVU2Hr1G121790.1 , HORVU6Hr1G046850.2 , HORVU5Hr1G004580.2 , HORVU5Hr1G004580.1
Wheat TraesCS2D02G573000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G225175 - -
2 Sobic.002G154450 - -
3 Sobic.007G127200 ECT protein, putative, expressed K07877: Ras-related protein Rab-2A
4 Sobic.010G052100 S-locus-like receptor protein kinase, putative, expressed -
5 Sobic.001G323101 - -
6 Sobic.004G127350 - -
7 Sobic.001G045900 polygalacturonase, putative, expressed -
8 Sobic.004G134400 - -
9 Sobic.010G247750 - -
10 Sobic.006G149900 cytokinin inducible protein, putative, expressed -
11 Sobic.009G079600 - -
12 Sobic.001G299900 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
13 Sobic.003G169550 - -
14 Sobic.004G194600 - -
15 Sobic.004G127733 - -
16 Sobic.004G274300 no apical meristem protein, putative, expressed -
17 Sobic.008G093300 - -
18 Sobic.006G037800 - -
19 Sobic.007G132650 - -
20 Sobic.003G251000 S-locus-like receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic003G395800 Sobic003G395800 Sobic010G225175 Sobic010G225175 Sobic003G395800--Sobic010G225175 Sobic002G154450 Sobic002G154450 Sobic003G395800--Sobic002G154450 Sobic007G127200 Sobic007G127200 Sobic003G395800--Sobic007G127200 Sobic010G052100 Sobic010G052100 Sobic003G395800--Sobic010G052100 Sobic001G323101 Sobic001G323101 Sobic003G395800--Sobic001G323101 Sobic004G127350 Sobic004G127350 Sobic003G395800--Sobic004G127350 Sobic001G045900 Sobic001G045900 Sobic003G395800--Sobic001G045900 Sobic004G134400 Sobic004G134400 Sobic003G395800--Sobic004G134400 Sobic010G247750 Sobic010G247750 Sobic003G395800--Sobic010G247750 Sobic010G225175--Sobic010G052100 Sobic010G225175--Sobic001G045900 Sobic010G225175--Sobic007G127200 Sobic010G225175--Sobic004G127350 Sobic010G225175--Sobic002G154450 Sobic010G149000 Sobic010G149000 Sobic010G225175--Sobic010G149000 Sobic006G037800 Sobic006G037800 Sobic010G225175--Sobic006G037800 Sobic010G225175--Sobic010G247750 Sobic001G045100 Sobic001G045100 Sobic010G225175--Sobic001G045100 Sobic002G154450--Sobic010G052100 Sobic004G127733 Sobic004G127733 Sobic002G154450--Sobic004G127733 Sobic002G154450--Sobic007G127200 Sobic006G176900 Sobic006G176900 Sobic002G154450--Sobic006G176900 Sobic002G154450--Sobic001G045900 Sobic003G251000 Sobic003G251000 Sobic002G154450--Sobic003G251000 Sobic006G149900 Sobic006G149900 Sobic002G154450--Sobic006G149900 Sobic002G154450--Sobic010G149000 Sobic005G154600 Sobic005G154600 Sobic002G154450--Sobic005G154600 Sobic007G127200--Sobic010G247750 Sobic007G127200--Sobic004G127733 Sobic007G127200--Sobic004G134400 Sobic007G127200--Sobic010G052100 Sobic007G127200--Sobic001G045900 Sobic009G079600 Sobic009G079600 Sobic007G127200--Sobic009G079600 Sobic006G035350 Sobic006G035350 Sobic007G127200--Sobic006G035350 Sobic008G093300 Sobic008G093300 Sobic007G127200--Sobic008G093300 Sobic003G260500 Sobic003G260500 Sobic007G127200--Sobic003G260500 Sobic010G052100--Sobic010G225175 Sobic010G052100--Sobic001G045900 Sobic010G052100--Sobic002G154450 Sobic010G052100--Sobic007G127200 Sobic010G052100--Sobic004G127350 Sobic009G094100 Sobic009G094100 Sobic010G052100--Sobic009G094100 Sobic007G103200 Sobic007G103200 Sobic010G052100--Sobic007G103200 Sobic010G052100--Sobic010G247750 Sobic010G052100--Sobic004G127733 Sobic001G323101--Sobic009G079600 Sobic001G323101--Sobic004G134400 Sobic003G187600 Sobic003G187600 Sobic001G323101--Sobic003G187600 Sobic004G274300 Sobic004G274300 Sobic001G323101--Sobic004G274300 Sobic007G132650 Sobic007G132650 Sobic001G323101--Sobic007G132650 Sobic003G112100 Sobic003G112100 Sobic001G323101--Sobic003G112100 Sobic004G129400 Sobic004G129400 Sobic001G323101--Sobic004G129400 Sobic003G169550 Sobic003G169550 Sobic001G323101--Sobic003G169550 Sobic001G323101--Sobic007G127200 Sobic004G127350--Sobic009G094100 Sobic004G127350--Sobic010G052100 Sobic004G127350--Sobic007G103200 Sobic004G127350--Sobic006G149900 Sobic004G127350--Sobic010G247750 Sobic004G127350--Sobic007G127200 Sobic004G127350--Sobic010G225175 Sobic004G127350--Sobic003G260500 Sobic004G127350--Sobic001G045900 Sobic001G045900--Sobic004G127733 Sobic001G045900--Sobic010G052100 Sobic001G045900--Sobic007G127200 Sobic001G045900--Sobic010G225175 Sobic004G207733 Sobic004G207733 Sobic001G045900--Sobic004G207733 Sobic001G045900--Sobic006G176900 Sobic001G045900--Sobic001G045100 Sobic001G045900--Sobic007G103200 Sobic001G045900--Sobic002G154450 Sobic004G134400--Sobic009G079600 Sobic004G134400--Sobic004G274300 Sobic004G134400--Sobic007G127200 Sobic004G134400--Sobic003G187600 Sobic004G134400--Sobic010G247750 Sobic004G134400--Sobic003G260500 Sobic004G134400--Sobic001G323101 Sobic004G133201 Sobic004G133201 Sobic004G134400--Sobic004G133201 Sobic004G134400--Sobic007G132650 Sobic010G247750--Sobic007G127200 Sobic010G247750--Sobic003G260500 Sobic010G247750--Sobic006G035350 Sobic010G247750--Sobic008G093300 Sobic010G247750--Sobic004G134400 Sobic010G247750--Sobic007G103200 Sobic010G143700 Sobic010G143700 Sobic010G247750--Sobic010G143700 Sobic010G247750--Sobic010G052100 Sobic010G247750--Sobic009G079600
Octagon: transcription factors


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