Gene annotation
Transcriptome id Sobic.004G222700.2,Sobic.004G222700.1,Sobic.004G222700.4,Sobic.004G222700.3
Synonym Sb04g026720, PQL2, PQL1
Functional annotation Photosystem II calcium ion binding protein (Os) (PubMedID : 27208977)
expressed protein
UniProt A0A1Z5RNN1 , C5XY50
Pfam PF05757
Panther DB PTHR33399 PTHR33399:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G01440 : PsbQ-like 1
RAP-DB (Rice) LOC_Os04g44190.2,LOC_Os02g42000.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G059090.11 , HORVU6Hr1G059090.12 , HORVU6Hr1G059090.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G058600 O-methyltransferase, putative, expressed K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
2 Sobic.009G015500 - -
3 Sobic.001G452200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Caleosin-related family protein("PubMedID : 26759170,PubMedID : 24597475")@caleosin related protein, putative, expressed K17991: peroxygenase
4 Sobic.010G070750 - -
5 Sobic.006G142000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.006G181900 aluminum-activated malate transporter, putative, expressed -
7 Sobic.009G158600 - -
8 Sobic.003G015200 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
9 Sobic.001G323600 transporter family protein, putative, expressed -
10 Sobic.005G064900 cytochrome P450, putative, expressed -
11 Sobic.009G006500 integral membrane protein DUF6 containing protein, expressed -
12 Sobic.003G024600 CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.007G164500 - -
14 Sobic.001G373600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.004G308300 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
16 Sobic.005G088700 expressed protein -
17 Sobic.001G508400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.002G097000 expressed protein -
19 Sobic.002G107400 aldehyde oxidase, putative, expressed -
20 Sobic.001G466450 - -


Gene co-expression network
sample Sobic004G222700 Sobic004G222700 Sobic007G058600 Sobic007G058600 Sobic004G222700--Sobic007G058600 Sobic009G015500 Sobic009G015500 Sobic004G222700--Sobic009G015500 Sobic001G452200 Sobic001G452200 Sobic004G222700--Sobic001G452200 Sobic010G070750 Sobic010G070750 Sobic004G222700--Sobic010G070750 Sobic006G142000 Sobic006G142000 Sobic004G222700--Sobic006G142000 Sobic006G181900 Sobic006G181900 Sobic004G222700--Sobic006G181900 Sobic009G158600 Sobic009G158600 Sobic004G222700--Sobic009G158600 Sobic003G015200 Sobic003G015200 Sobic004G222700--Sobic003G015200 Sobic001G323600 Sobic001G323600 Sobic004G222700--Sobic001G323600 Sobic007G058600--Sobic009G015500 Sobic007G058600--Sobic003G015200 Sobic005G064900 Sobic005G064900 Sobic007G058600--Sobic005G064900 Sobic007G058600--Sobic001G323600 Sobic007G058600--Sobic006G142000 Sobic005G088700 Sobic005G088700 Sobic007G058600--Sobic005G088700 Sobic003G024600 Sobic003G024600 Sobic007G058600--Sobic003G024600 Sobic001G373600 Sobic001G373600 Sobic007G058600--Sobic001G373600 Sobic007G164500 Sobic007G164500 Sobic007G058600--Sobic007G164500 Sobic009G015500--Sobic007G058600 Sobic009G015500--Sobic001G323600 Sobic009G015500--Sobic010G070750 Sobic004G308300 Sobic004G308300 Sobic009G015500--Sobic004G308300 Sobic009G015500--Sobic005G088700 Sobic009G015500--Sobic009G158600 Sobic009G015500--Sobic003G024600 Sobic009G015500--Sobic007G164500 Sobic009G015500--Sobic001G373600 Sobic009G006500 Sobic009G006500 Sobic001G452200--Sobic009G006500 Sobic001G452200--Sobic003G015200 Sobic001G452200--Sobic007G058600 Sobic001G452200--Sobic009G015500 Sobic002G107400 Sobic002G107400 Sobic001G452200--Sobic002G107400 Sobic001G452200--Sobic006G181900 Sobic002G416500 Sobic002G416500 Sobic001G452200--Sobic002G416500 Sobic001G452200--Sobic010G070750 Sobic001G452200--Sobic004G308300 Sobic010G070750--Sobic007G164500 Sobic010G070750--Sobic001G323600 Sobic010G070750--Sobic003G024600 Sobic010G070750--Sobic001G373600 Sobic001G466450 Sobic001G466450 Sobic010G070750--Sobic001G466450 Sobic006G142000--Sobic007G164500 Sobic006G142000--Sobic001G373600 Sobic006G142000--Sobic001G323600 Sobic006G142000--Sobic003G024600 Sobic006G142000--Sobic007G058600 Sobic006G142000--Sobic001G466450 Sobic009G158500 Sobic009G158500 Sobic006G181900--Sobic009G158500 Sobic006G181900--Sobic007G058600 Sobic006G181900--Sobic009G015500 Sobic001G508400 Sobic001G508400 Sobic006G181900--Sobic001G508400 Sobic006G181900--Sobic010G070750 Sobic006G181900--Sobic009G006500 Sobic006G181900--Sobic003G024600 Sobic006G181900--Sobic003G015200 Sobic006G181900--Sobic001G323600 Sobic009G158600--Sobic001G323600 Sobic009G158600--Sobic009G015500 Sobic009G158600--Sobic010G070750 Sobic009G158600--Sobic007G164500 Sobic009G158600--Sobic004G308300 Sobic009G158600--Sobic003G024600 Sobic009G158600--Sobic001G373600 Sobic009G158600--Sobic005G088700 Sobic009G158600--Sobic001G466450 Sobic003G015200--Sobic007G058600 Sobic004G108800 Sobic004G108800 Sobic003G015200--Sobic004G108800 Sobic003G015200--Sobic005G064900 Sobic003G015200--Sobic009G015500 Sobic005G149600 Sobic005G149600 Sobic003G015200--Sobic005G149600 Sobic007G156800 Sobic007G156800 Sobic003G015200--Sobic007G156800 Sobic005G152500 Sobic005G152500 Sobic003G015200--Sobic005G152500 Sobic005G089200 Sobic005G089200 Sobic003G015200--Sobic005G089200 Sobic003G015200--Sobic009G006500 Sobic001G323600--Sobic001G373600 Sobic001G323600--Sobic007G164500 Sobic001G323600--Sobic003G024600 Sobic001G323600--Sobic005G088700 Sobic001G323600--Sobic001G466450
Octagon: transcription factors


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