Gene annotation
Transcriptome id Sobic.004G227400.2
Synonym SbERF48, Sb04g027180, ethylene response factor 48
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1Z5RPK9
Pfam PF00847
Panther DB PTHR31657 PTHR31657:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G20880 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g42585.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053203 , Zm00025a031821 , Zm00025a035951 , Zm00025a046712 , Zm00025a055020 , Zm00025a056561 , Zm00025a022855 , Zm00025a033320 , Zm00025a049794 , Zm00025a057002 , Zm00025a001066 , Zm00025a010474 , Zm00025a045437 , Zm00025a021006 , Zm00025a022123 , Zm00025a032925 , Zm00025a032103 , Zm00025a043457 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671 , Zm00025a049497
Brachypodium KQJ90021 , KQK06792 , PNT61818 , KQK00491 , PNT62439 , KQJ98221 , KQK01160 , PNT67305 , KQJ86112 , KQJ83714
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU6Hr1G060220.1 , HORVU5Hr1G018720.1 , HORVU7Hr1G037180.2 , HORVU3Hr1G030310.1 , HORVU7Hr1G037180.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU6Hr1G085850.4 , HORVU6Hr1G085850.5 , HORVU6Hr1G085850.6 , HORVU6Hr1G085850.2 , HORVU6Hr1G085850.3 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU1Hr1G082310.1 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS6A02G360300 , TraesCS7D02G147200 , TraesCS5D02G200900 , TraesCS5B02G193200 , TraesCS7B02G162100 , TraesCS2A02G373700 , TraesCS7A02G145800 , TraesCS7D02G147100 , TraesCS7B02G048100 , TraesCS6B02G393200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
2 Sobic.005G115800 cytochrome P450, putative, expressed -
3 Sobic.010G076500 - -
4 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
5 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
6 Sobic.003G078501 - -
7 Sobic.003G233900 - -
8 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
9 Sobic.003G373150 - -
10 Sobic.004G155150 - -
11 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
12 Sobic.001G159850 - -
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic004G227400 Sobic004G227400 Sobic005G087800 Sobic005G087800 Sobic004G227400--Sobic005G087800 Sobic005G115800 Sobic005G115800 Sobic004G227400--Sobic005G115800 Sobic010G076500 Sobic010G076500 Sobic004G227400--Sobic010G076500 Sobic004G310600 Sobic004G310600 Sobic004G227400--Sobic004G310600 Sobic009G000700 Sobic009G000700 Sobic004G227400--Sobic009G000700 Sobic003G078501 Sobic003G078501 Sobic004G227400--Sobic003G078501 Sobic003G233900 Sobic003G233900 Sobic004G227400--Sobic003G233900 Sobic010G006700 Sobic010G006700 Sobic004G227400--Sobic010G006700 Sobic003G373150 Sobic003G373150 Sobic004G227400--Sobic003G373150 Sobic005G087800--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic005G087800--Sobic004G285100 Sobic002G182800 Sobic002G182800 Sobic005G087800--Sobic002G182800 Sobic002G189000 Sobic002G189000 Sobic005G087800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic005G087800--Sobic004G283300 Sobic005G087800--Sobic004G310600 Sobic003G227600 Sobic003G227600 Sobic005G087800--Sobic003G227600 Sobic009G128300 Sobic009G128300 Sobic005G087800--Sobic009G128300 Sobic005G087800--Sobic009G000700 Sobic007G166900 Sobic007G166900 Sobic005G115800--Sobic007G166900 Sobic005G115800--Sobic010G006700 Sobic005G115800--Sobic004G310600 Sobic001G159850 Sobic001G159850 Sobic005G115800--Sobic001G159850 Sobic001G095750 Sobic001G095750 Sobic010G076500--Sobic001G095750 Sobic010G076500--Sobic004G227400 Sobic010G076500--Sobic002G189000 Sobic010G085400 Sobic010G085400 Sobic010G076500--Sobic010G085400 Sobic002G013900 Sobic002G013900 Sobic010G076500--Sobic002G013900 Sobic010G076500--Sobic002G182800 Sobic010G076500--Sobic003G233900 Sobic003G131500 Sobic003G131500 Sobic010G076500--Sobic003G131500 Sobic010G076500--Sobic005G087800 Sobic004G310600--Sobic009G000700 Sobic004G310600--Sobic003G078501 Sobic004G310600--Sobic010G006700 Sobic004G310600--Sobic003G373150 Sobic004G155150 Sobic004G155150 Sobic004G310600--Sobic004G155150 Sobic004G331300 Sobic004G331300 Sobic004G310600--Sobic004G331300 Sobic004G310600--Sobic003G233900 Sobic004G257350 Sobic004G257350 Sobic004G310600--Sobic004G257350 Sobic006G267900 Sobic006G267900 Sobic004G310600--Sobic006G267900 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic009G000700--Sobic010G006700 Sobic009G000700--Sobic004G331300 Sobic009G000700--Sobic003G233900 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic009G000700--Sobic001G125100 Sobic003G078501--Sobic004G310600 Sobic003G078501--Sobic009G000700 Sobic003G078501--Sobic010G006700 Sobic003G078501--Sobic001G125100 Sobic003G078501--Sobic001G159850 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic010G006700--Sobic004G331300 Sobic010G006700--Sobic003G078501 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic004G283201 Sobic004G283201 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200
Octagon: transcription factors


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