Gene annotation
Transcriptome id Sobic.004G247900.1
Synonym AGD11, Sb04g028770
Functional annotation OsCML20 - Calmodulin-related calcium sensor protein, expressed
UniProt C5XZA8
Pfam PF13833 PF13202
Panther DB PTHR10891 PTHR10891:SF576
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G73630 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os02g50060.1 : OsCML20 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a032664
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G267100 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.004G293900 thioesterase family protein, putative, expressed -
3 Sobic.003G198000 SWIM zinc finger family protein, putative, expressed -
4 Sobic.006G014300 - -
5 Sobic.004G247400 caleosin related protein, putative, expressed K17991: peroxygenase
6 Sobic.002G265133 - -
7 Sobic.010G159500 LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
8 Sobic.010G152900 beta-D-xylosidase, putative, expressed -
9 Sobic.007G095000 cytochrome P450, putative, expressed -
10 Sobic.002G363200 saccharopine dehydrogenase, putative, expressed -
11 Sobic.001G173100 cytochrome P450, putative, expressed -
12 Sobic.003G239400 wax synthase isoform 3, putative, expressed -
13 Sobic.007G073300 OsSCP38 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
14 Sobic.001G147650 - -
15 Sobic.001G332050 - -
16 Sobic.001G332050 - -
17 Sobic.001G332050 - -
18 Sobic.001G332050 - -
19 Sobic.001G332050 - -
20 Sobic.001G332050 - -


Gene co-expression network
sample Sobic004G247900 Sobic004G247900 Sobic002G267100 Sobic002G267100 Sobic004G247900--Sobic002G267100 Sobic004G293900 Sobic004G293900 Sobic004G247900--Sobic004G293900 Sobic003G198000 Sobic003G198000 Sobic004G247900--Sobic003G198000 Sobic006G014300 Sobic006G014300 Sobic004G247900--Sobic006G014300 Sobic004G247400 Sobic004G247400 Sobic004G247900--Sobic004G247400 Sobic002G265133 Sobic002G265133 Sobic004G247900--Sobic002G265133 Sobic010G159500 Sobic010G159500 Sobic004G247900--Sobic010G159500 Sobic010G152900 Sobic010G152900 Sobic004G247900--Sobic010G152900 Sobic007G095000 Sobic007G095000 Sobic004G247900--Sobic007G095000 Sobic002G267100--Sobic004G293900 Sobic002G267100--Sobic010G159500 Sobic002G267100--Sobic007G095000 Sobic001G147650 Sobic001G147650 Sobic002G267100--Sobic001G147650 Sobic003G239400 Sobic003G239400 Sobic002G267100--Sobic003G239400 Sobic001G332050 Sobic001G332050 Sobic002G267100--Sobic001G332050 Sobic004G293900--Sobic010G159500 Sobic004G293900--Sobic001G332050 Sobic003G198000--Sobic006G014300 Sobic001G261750 Sobic001G261750 Sobic003G198000--Sobic001G261750 Sobic001G173000 Sobic001G173000 Sobic003G198000--Sobic001G173000 Sobic003G198000--Sobic004G247900 Sobic001G494600 Sobic001G494600 Sobic003G198000--Sobic001G494600 Sobic006G014300--Sobic003G198000 Sobic006G014300--Sobic004G293900 Sobic006G014300--Sobic004G247900 Sobic006G014300--Sobic002G267100 Sobic001G173100 Sobic001G173100 Sobic006G014300--Sobic001G173100 Sobic006G014300--Sobic001G173000 Sobic010G195800 Sobic010G195800 Sobic006G014300--Sobic010G195800 Sobic008G087300 Sobic008G087300 Sobic006G014300--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic006G014300--Sobic004G167000 Sobic005G129000 Sobic005G129000 Sobic004G247400--Sobic005G129000 Sobic004G247400--Sobic004G247900 Sobic004G191500 Sobic004G191500 Sobic004G247400--Sobic004G191500 Sobic003G388400 Sobic003G388400 Sobic004G247400--Sobic003G388400 Sobic004G298700 Sobic004G298700 Sobic004G247400--Sobic004G298700 Sobic004G247400--Sobic003G198000 Sobic001G432500 Sobic001G432500 Sobic004G247400--Sobic001G432500 Sobic001G291500 Sobic001G291500 Sobic004G247400--Sobic001G291500 Sobic005G190900 Sobic005G190900 Sobic004G247400--Sobic005G190900 Sobic002G265133--Sobic004G293900 Sobic009G069100 Sobic009G069100 Sobic002G265133--Sobic009G069100 Sobic002G265133--Sobic010G152900 Sobic002G129700 Sobic002G129700 Sobic002G265133--Sobic002G129700 Sobic002G265133--Sobic001G332050 Sobic008G138300 Sobic008G138300 Sobic010G159500--Sobic008G138300 Sobic009G116300 Sobic009G116300 Sobic010G159500--Sobic009G116300 Sobic003G206300 Sobic003G206300 Sobic010G159500--Sobic003G206300 Sobic010G200000 Sobic010G200000 Sobic010G159500--Sobic010G200000 Sobic003G206000 Sobic003G206000 Sobic010G159500--Sobic003G206000 Sobic010G159500--Sobic001G332050 Sobic010G152900--Sobic003G239400 Sobic010G152900--Sobic003G206300 Sobic010G152900--Sobic010G200000 Sobic010G152900--Sobic009G116300 Sobic010G152900--Sobic001G332050 Sobic006G125600 Sobic006G125600 Sobic007G095000--Sobic006G125600 Sobic005G135800 Sobic005G135800 Sobic007G095000--Sobic005G135800 Sobic010G124500 Sobic010G124500 Sobic007G095000--Sobic010G124500 Sobic003G071300 Sobic003G071300 Sobic007G095000--Sobic003G071300 Sobic003G071100 Sobic003G071100 Sobic007G095000--Sobic003G071100 Sobic010G108200 Sobic010G108200 Sobic007G095000--Sobic010G108200 Sobic010G108001 Sobic010G108001 Sobic007G095000--Sobic010G108001 Sobic005G135400 Sobic005G135400 Sobic007G095000--Sobic005G135400 Sobic004G293800 Sobic004G293800 Sobic007G095000--Sobic004G293800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.