Gene annotation
Transcriptome id Sobic.004G288300.1
Synonym Sb04g032390
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
allantoin permease, putative, expressed
UniProt A0A194YS31
Pfam PF02133
Panther DB PTHR30618 PTHR30618:SF0
NCBI CDD KOG2466; Uridine permease/thiamine transporter/allantoin transport
KEGG Orthology K03457; nucleobase:cation symporter-1, NCS1 family
Gene Ontology GO:0016020; membrane GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT5G03555 : permease, cytosine/purines, uracil, thiamine, allantoin family protein
RAP-DB (Rice) LOC_Os02g44680.1 : allantoin permease, putative, expressed
MaizeGDB (Corn) Zm00025a021446
Brachypodium KQK00711 , KQJ94961
Barley HORVU6Hr1G064220.2 , HORVU6Hr1G064220.1 , HORVU7Hr1G073640.1 , HORVU7Hr1G073640.3 , HORVU7Hr1G073640.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G170600 OsFBX85 - F-box domain containing protein, expressed -
2 Sobic.009G091940 - -
3 Sobic.003G282400 OsMADS32 - MADS-box family gene with MIKCc type-box, expressed -
4 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
5 Sobic.001G377400 expressed protein -
6 Sobic.007G014500 NB-ARC domain containing protein, expressed -
7 Sobic.001G163500 - -
8 Sobic.010G002600 methyltransferase, putative, expressed -
9 Sobic.003G267150 - -
10 Sobic.004G181400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed K16286: E3 ubiquitin-protein ligase EL5
11 Sobic.008G041500 - -
12 Sobic.002G062400 - -
13 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
14 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
15 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
16 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
17 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
18 Sobic.006G193801 - -
19 Sobic.007G179100 - -
20 Sobic.004G262550 - -


Gene co-expression network
sample Sobic004G288300 Sobic004G288300 Sobic001G170600 Sobic001G170600 Sobic004G288300--Sobic001G170600 Sobic009G091940 Sobic009G091940 Sobic004G288300--Sobic009G091940 Sobic003G282400 Sobic003G282400 Sobic004G288300--Sobic003G282400 Sobic002G319900 Sobic002G319900 Sobic004G288300--Sobic002G319900 Sobic001G377400 Sobic001G377400 Sobic004G288300--Sobic001G377400 Sobic007G014500 Sobic007G014500 Sobic004G288300--Sobic007G014500 Sobic001G163500 Sobic001G163500 Sobic004G288300--Sobic001G163500 Sobic010G002600 Sobic010G002600 Sobic004G288300--Sobic010G002600 Sobic003G267150 Sobic003G267150 Sobic004G288300--Sobic003G267150 Sobic001G170600--Sobic009G091940 Sobic002G160500 Sobic002G160500 Sobic001G170600--Sobic002G160500 Sobic001G170600--Sobic003G267150 Sobic004G262550 Sobic004G262550 Sobic001G170600--Sobic004G262550 Sobic003G389150 Sobic003G389150 Sobic001G170600--Sobic003G389150 Sobic009G091940--Sobic002G160500 Sobic009G091940--Sobic003G267150 Sobic009G091940--Sobic004G262550 Sobic009G091940--Sobic003G389150 Sobic004G313000 Sobic004G313000 Sobic009G091940--Sobic004G313000 Sobic002G062400 Sobic002G062400 Sobic003G282400--Sobic002G062400 Sobic003G282400--Sobic001G163500 Sobic003G129700 Sobic003G129700 Sobic003G282400--Sobic003G129700 Sobic006G009200 Sobic006G009200 Sobic003G282400--Sobic006G009200 Sobic008G041500 Sobic008G041500 Sobic003G282400--Sobic008G041500 Sobic009G035000 Sobic009G035000 Sobic003G282400--Sobic009G035000 Sobic007G045750 Sobic007G045750 Sobic003G282400--Sobic007G045750 Sobic006G193801 Sobic006G193801 Sobic003G282400--Sobic006G193801 Sobic009G158150 Sobic009G158150 Sobic003G282400--Sobic009G158150 Sobic002G319900--Sobic003G267150 Sobic002G319900--Sobic002G160500 Sobic002G319900--Sobic004G262550 Sobic002G319900--Sobic004G313000 Sobic002G319900--Sobic009G091940 Sobic004G248000 Sobic004G248000 Sobic001G377400--Sobic004G248000 Sobic001G377400--Sobic002G319900 Sobic001G377400--Sobic003G267150 Sobic001G377400--Sobic004G313000 Sobic001G377400--Sobic002G160500 Sobic007G014500--Sobic002G319900 Sobic007G014500--Sobic004G262550 Sobic007G014500--Sobic003G267150 Sobic007G014500--Sobic002G160500 Sobic007G014500--Sobic004G313000 Sobic001G163500--Sobic003G129700 Sobic001G163500--Sobic009G158150 Sobic001G163500--Sobic002G062400 Sobic001G163500--Sobic003G282400 Sobic001G163500--Sobic007G045750 Sobic007G179100 Sobic007G179100 Sobic001G163500--Sobic007G179100 Sobic001G163500--Sobic008G041500 Sobic002G312550 Sobic002G312550 Sobic001G163500--Sobic002G312550 Sobic001G163500--Sobic006G193801 Sobic010G002600--Sobic008G041500 Sobic010G002600--Sobic009G035000 Sobic010G002600--Sobic006G193801 Sobic006G192900 Sobic006G192900 Sobic010G002600--Sobic006G192900 Sobic010G002600--Sobic003G282400 Sobic004G181400 Sobic004G181400 Sobic010G002600--Sobic004G181400 Sobic010G002600--Sobic002G319900 Sobic003G185000 Sobic003G185000 Sobic010G002600--Sobic003G185000 Sobic010G002600--Sobic001G163500 Sobic003G267150--Sobic002G160500 Sobic003G267150--Sobic004G262550 Sobic003G267150--Sobic009G091940 Sobic003G267150--Sobic004G313000 Sobic003G267150--Sobic003G389150
Octagon: transcription factors


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