Gene annotation
Transcriptome id Sobic.004G181400.1
Synonym Sb04g023070, ATL3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RING-H2 finger protein ATL3F, putative, expressed
UniProt A0A1Z5RNW4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology K16286; E3 ubiquitin-protein ligase EL5
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G43420 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g35329.1 : RING-H2 finger protein ATL3F, putative, expressed
MaizeGDB (Corn) Zm00025a011255 , Zm00025a020694
Brachypodium -
Barley HORVU0Hr1G003000.2 , HORVU0Hr1G003000.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G002600 methyltransferase, putative, expressed -
2 Sobic.006G192900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.008G041500 - -
4 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
5 Sobic.009G035000 expressed protein -
6 Sobic.003G267150 - -
7 Sobic.004G149150 - -
8 Sobic.008G108100 - -
9 Sobic.004G173300 expressed protein -
10 Sobic.003G282400 OsMADS32 - MADS-box family gene with MIKCc type-box, expressed -
11 Sobic.006G193801 - -
12 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
13 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
14 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
15 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
16 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
17 Sobic.004G313000 leucine rich repeat containing protein, expressed -
18 Sobic.010G241400 expressed protein -
19 Sobic.001G377400 expressed protein -
20 Sobic.004G262550 - -


Gene co-expression network
sample Sobic004G181400 Sobic004G181400 Sobic010G002600 Sobic010G002600 Sobic004G181400--Sobic010G002600 Sobic006G192900 Sobic006G192900 Sobic004G181400--Sobic006G192900 Sobic008G041500 Sobic008G041500 Sobic004G181400--Sobic008G041500 Sobic002G319900 Sobic002G319900 Sobic004G181400--Sobic002G319900 Sobic009G035000 Sobic009G035000 Sobic004G181400--Sobic009G035000 Sobic003G267150 Sobic003G267150 Sobic004G181400--Sobic003G267150 Sobic004G149150 Sobic004G149150 Sobic004G181400--Sobic004G149150 Sobic008G108100 Sobic008G108100 Sobic004G181400--Sobic008G108100 Sobic004G173300 Sobic004G173300 Sobic004G181400--Sobic004G173300 Sobic010G002600--Sobic008G041500 Sobic010G002600--Sobic009G035000 Sobic006G193801 Sobic006G193801 Sobic010G002600--Sobic006G193801 Sobic010G002600--Sobic006G192900 Sobic003G282400 Sobic003G282400 Sobic010G002600--Sobic003G282400 Sobic010G002600--Sobic004G181400 Sobic010G002600--Sobic002G319900 Sobic003G185000 Sobic003G185000 Sobic010G002600--Sobic003G185000 Sobic001G163500 Sobic001G163500 Sobic010G002600--Sobic001G163500 Sobic010G241400 Sobic010G241400 Sobic006G192900--Sobic010G241400 Sobic006G192900--Sobic010G002600 Sobic002G307500 Sobic002G307500 Sobic006G192900--Sobic002G307500 Sobic006G192900--Sobic009G035000 Sobic006G009200 Sobic006G009200 Sobic006G192900--Sobic006G009200 Sobic006G192900--Sobic008G041500 Sobic006G192900--Sobic004G181400 Sobic004G093800 Sobic004G093800 Sobic006G192900--Sobic004G093800 Sobic002G062400 Sobic002G062400 Sobic006G192900--Sobic002G062400 Sobic008G041500--Sobic009G035000 Sobic008G041500--Sobic003G282400 Sobic007G179100 Sobic007G179100 Sobic008G041500--Sobic007G179100 Sobic008G041500--Sobic010G002600 Sobic008G041500--Sobic002G062400 Sobic008G041500--Sobic001G163500 Sobic010G156300 Sobic010G156300 Sobic008G041500--Sobic010G156300 Sobic003G129700 Sobic003G129700 Sobic008G041500--Sobic003G129700 Sobic007G045750 Sobic007G045750 Sobic008G041500--Sobic007G045750 Sobic002G319900--Sobic003G267150 Sobic002G160500 Sobic002G160500 Sobic002G319900--Sobic002G160500 Sobic004G262550 Sobic004G262550 Sobic002G319900--Sobic004G262550 Sobic004G313000 Sobic004G313000 Sobic002G319900--Sobic004G313000 Sobic009G091940 Sobic009G091940 Sobic002G319900--Sobic009G091940 Sobic009G035000--Sobic008G041500 Sobic009G035000--Sobic002G062400 Sobic009G035000--Sobic007G045750 Sobic009G035000--Sobic003G129700 Sobic009G035000--Sobic006G009200 Sobic009G035000--Sobic003G282400 Sobic009G035000--Sobic006G193801 Sobic009G035000--Sobic010G002600 Sobic009G035000--Sobic001G163500 Sobic003G267150--Sobic002G160500 Sobic003G267150--Sobic004G262550 Sobic003G267150--Sobic009G091940 Sobic003G267150--Sobic004G313000 Sobic003G389150 Sobic003G389150 Sobic003G267150--Sobic003G389150 Sobic004G149150--Sobic002G160500 Sobic004G149150--Sobic003G267150 Sobic004G149150--Sobic004G262550 Sobic004G149150--Sobic009G091940 Sobic004G149150--Sobic003G389150 Sobic008G108100--Sobic003G267150 Sobic009G115800 Sobic009G115800 Sobic008G108100--Sobic009G115800 Sobic008G108100--Sobic002G160500 Sobic008G108100--Sobic004G313000 Sobic008G108100--Sobic004G262550 Sobic004G173300--Sobic004G093800 Sobic004G173300--Sobic010G002600 Sobic005G131500 Sobic005G131500 Sobic004G173300--Sobic005G131500 Sobic004G173300--Sobic002G307500 Sobic006G089266 Sobic006G089266 Sobic004G173300--Sobic006G089266 Sobic004G173300--Sobic006G192900 Sobic004G173300--Sobic004G181400 Sobic009G253900 Sobic009G253900 Sobic004G173300--Sobic009G253900 Sobic008G142500 Sobic008G142500 Sobic004G173300--Sobic008G142500
Octagon: transcription factors


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