Gene annotation
Transcriptome id Sobic.010G241400.1
Synonym
Functional annotation expressed protein
UniProt C5Z8Q0
Pfam PF08711
Panther DB PTHR15141 PTHR15141:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09850 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os03g18470.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G192900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
2 Sobic.006G009200 expressed protein -
3 Sobic.002G062400 - -
4 Sobic.005G168900 expressed protein -
5 Sobic.001G217850 - -
6 Sobic.004G176550 - -
7 Sobic.009G035000 expressed protein -
8 Sobic.009G170050 - -
9 Sobic.001G134150 - -
10 Sobic.007G045750 - -
11 Sobic.003G129700 - -
12 Sobic.001G014600 - -
13 Sobic.007G226900 ELF protein, expressed -
14 Sobic.010G124100 - -
15 Sobic.006G097600 - -
16 Sobic.003G282400 OsMADS32 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.001G401750 - -
18 Sobic.005G119400 stripe rust resistance protein Yr10, putative, expressed -
19 Sobic.009G145200 Up-reguralion under drought(PubMedID : 24916767)@ethylene-responsive transcription factor("PubMedID : 26759170,PubMedID : 24597475")@AP2 domain containing protein, expressed -
20 Sobic.002G268600 PCF-like (ClassI) Subclade 7 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic010G241400 Sobic010G241400 Sobic006G192900 Sobic006G192900 Sobic010G241400--Sobic006G192900 Sobic006G009200 Sobic006G009200 Sobic010G241400--Sobic006G009200 Sobic002G062400 Sobic002G062400 Sobic010G241400--Sobic002G062400 Sobic005G168900 Sobic005G168900 Sobic010G241400--Sobic005G168900 Sobic001G217850 Sobic001G217850 Sobic010G241400--Sobic001G217850 Sobic004G176550 Sobic004G176550 Sobic010G241400--Sobic004G176550 Sobic009G035000 Sobic009G035000 Sobic010G241400--Sobic009G035000 Sobic009G170050 Sobic009G170050 Sobic010G241400--Sobic009G170050 Sobic001G134150 Sobic001G134150 Sobic010G241400--Sobic001G134150 Sobic006G192900--Sobic010G241400 Sobic010G002600 Sobic010G002600 Sobic006G192900--Sobic010G002600 Sobic002G307500 Sobic002G307500 Sobic006G192900--Sobic002G307500 Sobic006G192900--Sobic009G035000 Sobic006G192900--Sobic006G009200 Sobic008G041500 Sobic008G041500 Sobic006G192900--Sobic008G041500 Sobic004G181400 Sobic004G181400 Sobic006G192900--Sobic004G181400 Sobic004G093800 Sobic004G093800 Sobic006G192900--Sobic004G093800 Sobic006G192900--Sobic002G062400 Sobic006G009200--Sobic002G062400 Sobic007G045750 Sobic007G045750 Sobic006G009200--Sobic007G045750 Sobic003G282400 Sobic003G282400 Sobic006G009200--Sobic003G282400 Sobic006G009200--Sobic009G035000 Sobic003G129700 Sobic003G129700 Sobic006G009200--Sobic003G129700 Sobic009G158150 Sobic009G158150 Sobic006G009200--Sobic009G158150 Sobic009G025750 Sobic009G025750 Sobic006G009200--Sobic009G025750 Sobic006G009200--Sobic008G041500 Sobic001G050650 Sobic001G050650 Sobic006G009200--Sobic001G050650 Sobic002G062400--Sobic003G129700 Sobic002G062400--Sobic007G045750 Sobic001G163500 Sobic001G163500 Sobic002G062400--Sobic001G163500 Sobic002G062400--Sobic009G158150 Sobic002G062400--Sobic003G282400 Sobic002G062400--Sobic009G035000 Sobic002G062400--Sobic006G009200 Sobic002G062400--Sobic001G050650 Sobic002G062400--Sobic005G168900 Sobic005G168900--Sobic009G170050 Sobic005G168900--Sobic002G062400 Sobic001G516400 Sobic001G516400 Sobic005G168900--Sobic001G516400 Sobic002G178900 Sobic002G178900 Sobic005G168900--Sobic002G178900 Sobic005G168900--Sobic009G158150 Sobic005G168900--Sobic003G129700 Sobic005G168900--Sobic007G045750 Sobic006G174050 Sobic006G174050 Sobic005G168900--Sobic006G174050 Sobic007G226900 Sobic007G226900 Sobic005G168900--Sobic007G226900 Sobic001G217850--Sobic005G168900 Sobic001G217850--Sobic009G170050 Sobic001G217850--Sobic010G241400 Sobic001G217850--Sobic004G176550 Sobic003G357900 Sobic003G357900 Sobic001G217850--Sobic003G357900 Sobic001G217850--Sobic006G192900 Sobic001G217850--Sobic006G174050 Sobic001G217850--Sobic002G062400 Sobic001G217850--Sobic006G009200 Sobic005G119400 Sobic005G119400 Sobic004G176550--Sobic005G119400 Sobic003G261766 Sobic003G261766 Sobic004G176550--Sobic003G261766 Sobic004G176550--Sobic006G009200 Sobic009G115800 Sobic009G115800 Sobic004G176550--Sobic009G115800 Sobic004G176550--Sobic007G045750 Sobic004G176550--Sobic002G062400 Sobic010G124100 Sobic010G124100 Sobic004G176550--Sobic010G124100 Sobic004G176550--Sobic009G025750 Sobic006G083050 Sobic006G083050 Sobic004G176550--Sobic006G083050 Sobic009G035000--Sobic008G041500 Sobic009G035000--Sobic002G062400 Sobic009G035000--Sobic007G045750 Sobic009G035000--Sobic003G129700 Sobic009G035000--Sobic006G009200 Sobic009G035000--Sobic003G282400 Sobic006G193801 Sobic006G193801 Sobic009G035000--Sobic006G193801 Sobic009G035000--Sobic010G002600 Sobic009G035000--Sobic001G163500 Sobic009G170050--Sobic005G168900 Sobic009G170050--Sobic006G174050 Sobic009G170050--Sobic002G178900 Sobic009G170050--Sobic009G158150 Sobic009G170050--Sobic003G129700 Sobic006G097600 Sobic006G097600 Sobic009G170050--Sobic006G097600 Sobic009G170050--Sobic007G226900 Sobic009G170050--Sobic001G516400 Sobic009G170050--Sobic002G062400 Sobic002G268600 Sobic002G268600 Sobic001G134150--Sobic002G268600 Sobic001G489550 Sobic001G489550 Sobic001G134150--Sobic001G489550 Sobic001G134150--Sobic010G241400 Sobic007G126150 Sobic007G126150 Sobic001G134150--Sobic007G126150 Sobic007G207100 Sobic007G207100 Sobic001G134150--Sobic007G207100 Sobic004G320900 Sobic004G320900 Sobic001G134150--Sobic004G320900 Sobic010G008433 Sobic010G008433 Sobic001G134150--Sobic010G008433 Sobic010G222050 Sobic010G222050 Sobic001G134150--Sobic010G222050 Sobic001G134150--Sobic006G192900
Octagon: transcription factors


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