Gene annotation
Transcriptome id Sobic.004G173300.3,Sobic.004G173300.5,Sobic.004G173300.2,Sobic.004G173300.4,Sobic.004G173300.1,Sobic.004G173300.6
Synonym Sb04g022400, FRS5
Functional annotation expressed protein
UniProt A0A194YQ74
Pfam PF04434 PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G38180 : FAR1-related sequence 5
RAP-DB (Rice) LOC_Os02g34590.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium KQJ99830
Barley HORVU7Hr1G007000.40 , HORVU7Hr1G007000.43 , HORVU7Hr1G007000.29 , HORVU7Hr1G007000.28 , HORVU7Hr1G007000.38 , HORVU7Hr1G007000.39 , HORVU7Hr1G007000.34 , HORVU7Hr1G007000.35 , HORVU7Hr1G007000.36 , HORVU7Hr1G007000.37 , HORVU7Hr1G007000.30 , HORVU7Hr1G007000.31 , HORVU7Hr1G007000.32 , HORVU7Hr1G007000.33 , HORVU7Hr1G007000.45 , HORVU7Hr1G007000.44 , HORVU7Hr1G007000.47 , HORVU7Hr1G007000.46 , HORVU7Hr1G007000.41 , HORVU7Hr1G007000.42 , HORVU7Hr1G007000.49 , HORVU7Hr1G007000.48
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G173300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G093800 integral membrane protein, putative, expressed -
2 Sobic.010G002600 methyltransferase, putative, expressed -
3 Sobic.005G131500 - -
4 Sobic.002G307500 MATH domain containing protein, expressed -
5 Sobic.006G089266 - -
6 Sobic.006G192900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
7 Sobic.004G181400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed K16286: E3 ubiquitin-protein ligase EL5
8 Sobic.009G253900 - -
9 Sobic.008G142500 Leucine Rich Repeat family protein, expressed -
10 Sobic.008G041500 - -
11 Sobic.007G001700 ATOFP18/OFP18, putative, expressed -
12 Sobic.004G347000 - -
13 Sobic.009G035000 expressed protein -
14 Sobic.010G229025 - -
15 Sobic.006G193801 - -
16 Sobic.005G218300 - -
17 Sobic.006G009200 expressed protein -
18 Sobic.003G334500 - -
19 Sobic.003G068100 receptor kinase, putative, expressed -
20 Sobic.002G268600 PCF-like (ClassI) Subclade 7 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G173300 Sobic004G173300 Sobic004G093800 Sobic004G093800 Sobic004G173300--Sobic004G093800 Sobic010G002600 Sobic010G002600 Sobic004G173300--Sobic010G002600 Sobic005G131500 Sobic005G131500 Sobic004G173300--Sobic005G131500 Sobic002G307500 Sobic002G307500 Sobic004G173300--Sobic002G307500 Sobic006G089266 Sobic006G089266 Sobic004G173300--Sobic006G089266 Sobic006G192900 Sobic006G192900 Sobic004G173300--Sobic006G192900 Sobic004G181400 Sobic004G181400 Sobic004G173300--Sobic004G181400 Sobic009G253900 Sobic009G253900 Sobic004G173300--Sobic009G253900 Sobic008G142500 Sobic008G142500 Sobic004G173300--Sobic008G142500 Sobic004G093800--Sobic002G307500 Sobic001G489400 Sobic001G489400 Sobic004G093800--Sobic001G489400 Sobic009G199401 Sobic009G199401 Sobic004G093800--Sobic009G199401 Sobic004G093800--Sobic004G173300 Sobic004G093800--Sobic010G002600 Sobic004G093800--Sobic008G142500 Sobic010G229025 Sobic010G229025 Sobic004G093800--Sobic010G229025 Sobic004G093800--Sobic006G192900 Sobic004G093800--Sobic005G131500 Sobic008G041500 Sobic008G041500 Sobic010G002600--Sobic008G041500 Sobic009G035000 Sobic009G035000 Sobic010G002600--Sobic009G035000 Sobic006G193801 Sobic006G193801 Sobic010G002600--Sobic006G193801 Sobic010G002600--Sobic006G192900 Sobic003G282400 Sobic003G282400 Sobic010G002600--Sobic003G282400 Sobic010G002600--Sobic004G181400 Sobic002G319900 Sobic002G319900 Sobic010G002600--Sobic002G319900 Sobic003G185000 Sobic003G185000 Sobic010G002600--Sobic003G185000 Sobic001G163500 Sobic001G163500 Sobic010G002600--Sobic001G163500 Sobic005G131500--Sobic006G089266 Sobic006G085601 Sobic006G085601 Sobic005G131500--Sobic006G085601 Sobic005G131500--Sobic004G093800 Sobic005G131500--Sobic004G173300 Sobic003G068100 Sobic003G068100 Sobic005G131500--Sobic003G068100 Sobic009G216200 Sobic009G216200 Sobic005G131500--Sobic009G216200 Sobic005G131500--Sobic008G142500 Sobic005G131500--Sobic002G307500 Sobic004G267400 Sobic004G267400 Sobic005G131500--Sobic004G267400 Sobic002G307500--Sobic004G093800 Sobic002G307500--Sobic006G192900 Sobic002G307500--Sobic001G489400 Sobic002G307500--Sobic010G229025 Sobic002G307500--Sobic009G199401 Sobic006G235801 Sobic006G235801 Sobic002G307500--Sobic006G235801 Sobic006G221500 Sobic006G221500 Sobic002G307500--Sobic006G221500 Sobic002G307500--Sobic010G002600 Sobic006G136300 Sobic006G136300 Sobic002G307500--Sobic006G136300 Sobic006G089266--Sobic009G253900 Sobic006G089266--Sobic005G131500 Sobic006G089266--Sobic004G173300 Sobic006G089266--Sobic004G093800 Sobic007G001700 Sobic007G001700 Sobic006G089266--Sobic007G001700 Sobic005G218300 Sobic005G218300 Sobic006G089266--Sobic005G218300 Sobic002G377501 Sobic002G377501 Sobic006G089266--Sobic002G377501 Sobic006G089266--Sobic009G216200 Sobic006G089266--Sobic002G307500 Sobic010G241400 Sobic010G241400 Sobic006G192900--Sobic010G241400 Sobic006G192900--Sobic010G002600 Sobic006G192900--Sobic002G307500 Sobic006G192900--Sobic009G035000 Sobic006G009200 Sobic006G009200 Sobic006G192900--Sobic006G009200 Sobic006G192900--Sobic008G041500 Sobic006G192900--Sobic004G181400 Sobic006G192900--Sobic004G093800 Sobic002G062400 Sobic002G062400 Sobic006G192900--Sobic002G062400 Sobic004G181400--Sobic010G002600 Sobic004G181400--Sobic006G192900 Sobic004G181400--Sobic008G041500 Sobic004G181400--Sobic002G319900 Sobic004G181400--Sobic009G035000 Sobic003G267150 Sobic003G267150 Sobic004G181400--Sobic003G267150 Sobic004G149150 Sobic004G149150 Sobic004G181400--Sobic004G149150 Sobic008G108100 Sobic008G108100 Sobic004G181400--Sobic008G108100 Sobic004G181400--Sobic004G173300 Sobic009G253900--Sobic006G089266 Sobic009G253900--Sobic005G218300 Sobic010G054700 Sobic010G054700 Sobic009G253900--Sobic010G054700 Sobic009G253900--Sobic004G173300 Sobic009G253900--Sobic002G377501 Sobic009G253900--Sobic002G307500 Sobic009G253900--Sobic005G131500 Sobic004G347000 Sobic004G347000 Sobic009G253900--Sobic004G347000 Sobic009G253900--Sobic004G093800 Sobic001G014600 Sobic001G014600 Sobic008G142500--Sobic001G014600 Sobic009G173700 Sobic009G173700 Sobic008G142500--Sobic009G173700 Sobic001G326500 Sobic001G326500 Sobic008G142500--Sobic001G326500 Sobic008G142500--Sobic009G035000 Sobic006G083050 Sobic006G083050 Sobic008G142500--Sobic006G083050 Sobic005G116800 Sobic005G116800 Sobic008G142500--Sobic005G116800 Sobic002G421100 Sobic002G421100 Sobic008G142500--Sobic002G421100 Sobic008G142500--Sobic003G068100 Sobic008G142500--Sobic006G221500
Octagon: transcription factors


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