Gene annotation
Transcriptome id Sobic.005G161200.1
Synonym ABC33, CPS, ATCPS1, CPS1, GA1
Functional annotation ent-kaurene synthase, chloroplast precursor, putative, expressed
UniProt A0A1B6PSV2
Pfam PF03936 PF01397
Panther DB PTHR31739 PTHR31739:SF6
NCBI CDD -
KEGG Orthology K04120; ent-copalyl diphosphate synthase K14043syn-copalyl-diphosphate synthase
Gene Ontology GO:0016829; lyase activity GO:0010333terpene synthase activity GO:0000287magnesium ion binding GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G02780 : Terpenoid cyclases/Protein prenyltransferases superfamily protein
RAP-DB (Rice) LOC_Os04g09900.1 : ent-kaurene synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7D02G097000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G323000 SCP-like extracellular protein, expressed -
2 Sobic.005G161600 terpene synthase, putative, expressed K04121: ent-kaurene synthase
3 Sobic.010G174100 expressed protein -
4 Sobic.001G338900 cytochrome P450, putative, expressed -
5 Sobic.008G158266 - -
6 Sobic.001G076850 - -
7 Sobic.001G076850 - -
8 Sobic.001G076850 - -
9 Sobic.001G076850 - -
10 Sobic.001G076850 - -
11 Sobic.001G076850 - -
12 Sobic.001G076850 - -
13 Sobic.001G076850 - -
14 Sobic.001G076850 - -
15 Sobic.006G135500 glyoxal oxidase-related, putative, expressed -
16 Sobic.010G006200 expansin precursor, putative, expressed -
17 Sobic.001G314100 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.002G392200 peroxidase precursor, putative, expressed -
19 Sobic.002G392300 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.007G019900 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic005G161200 Sobic005G161200 Sobic004G323000 Sobic004G323000 Sobic005G161200--Sobic004G323000 Sobic005G161600 Sobic005G161600 Sobic005G161200--Sobic005G161600 Sobic010G174100 Sobic010G174100 Sobic005G161200--Sobic010G174100 Sobic001G338900 Sobic001G338900 Sobic005G161200--Sobic001G338900 Sobic008G158266 Sobic008G158266 Sobic005G161200--Sobic008G158266 Sobic001G076850 Sobic001G076850 Sobic005G161200--Sobic001G076850 Sobic004G323000--Sobic010G174100 Sobic004G323000--Sobic005G161200 Sobic010G139100 Sobic010G139100 Sobic004G323000--Sobic010G139100 Sobic001G314100 Sobic001G314100 Sobic004G323000--Sobic001G314100 Sobic009G096300 Sobic009G096300 Sobic004G323000--Sobic009G096300 Sobic001G301400 Sobic001G301400 Sobic004G323000--Sobic001G301400 Sobic004G323000--Sobic008G158266 Sobic010G021700 Sobic010G021700 Sobic004G323000--Sobic010G021700 Sobic002G391200 Sobic002G391200 Sobic004G323000--Sobic002G391200 Sobic004G228850 Sobic004G228850 Sobic005G161600--Sobic004G228850 Sobic005G161600--Sobic005G161200 Sobic005G161600--Sobic001G076850 Sobic010G174100--Sobic009G096300 Sobic010G174100--Sobic004G323000 Sobic006G171300 Sobic006G171300 Sobic010G174100--Sobic006G171300 Sobic010G174100--Sobic002G391200 Sobic010G174100--Sobic010G139100 Sobic010G174100--Sobic001G301400 Sobic010G174100--Sobic010G021700 Sobic010G115000 Sobic010G115000 Sobic010G174100--Sobic010G115000 Sobic010G174100--Sobic005G161200 Sobic001G338900--Sobic001G314100 Sobic010G006200 Sobic010G006200 Sobic001G338900--Sobic010G006200 Sobic001G338900--Sobic005G161200 Sobic001G338900--Sobic004G323000 Sobic001G314600 Sobic001G314600 Sobic001G338900--Sobic001G314600 Sobic001G338900--Sobic001G301400 Sobic003G059000 Sobic003G059000 Sobic001G338900--Sobic003G059000 Sobic002G122400 Sobic002G122400 Sobic001G338900--Sobic002G122400 Sobic001G338900--Sobic010G174100 Sobic008G158266--Sobic004G323000 Sobic008G158266--Sobic010G139100 Sobic006G135500 Sobic006G135500 Sobic008G158266--Sobic006G135500 Sobic008G158266--Sobic002G122400 Sobic008G158266--Sobic005G161200 Sobic008G158266--Sobic001G314100 Sobic008G158266--Sobic010G174100 Sobic008G158266--Sobic010G006200 Sobic009G032900 Sobic009G032900 Sobic008G158266--Sobic009G032900 Sobic001G076850--Sobic001G076850 Sobic004G254900 Sobic004G254900 Sobic001G076850--Sobic004G254900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.