Gene annotation
Transcriptome id Sobic.006G056300.1
Synonym Sb06g014450
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
reticuline oxidase-like protein precursor, putative, expressed
UniProt A0A1B6PKE9
Pfam PF08031 PF01565
Panther DB PTHR32448 PTHR32448:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G44410 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os06g35700.1 : reticuline oxidase-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a042340 , Zm00025a051097 , Zm00025a051098
Brachypodium -
Barley HORVU4Hr1G017270.1 , HORVU7Hr1G026630.6 , HORVU7Hr1G026630.4 , HORVU7Hr1G026630.5 , HORVU7Hr1G026630.2 , HORVU7Hr1G026630.3 , HORVU7Hr1G026630.1 , HORVU4Hr1G086520.1
Wheat TraesCS1A02G424100 , TraesCS4B02G391900 , TraesCS7B02G026000 , TraesCS7A02G354100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G183700 transferase family protein, putative, expressed -
2 Sobic.001G421450 - -
3 Sobic.002G172300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G371650 - -
5 Sobic.004G264800 expressed protein -
6 Sobic.002G132201 - -
7 Sobic.003G253650 - -
8 Sobic.007G077600 MBTB20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
9 Sobic.007G032200 - -
10 Sobic.002G054800 "O2(Ortholog in maize:Hartings et al., 1989)"(PubMedID : 31659852)@bZIP transcription factor domain containing protein, expressed -
11 Sobic.002G094700 - -
12 Sobic.007G156400 Up-reguralion under drought(PubMedID : 24916767)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
13 Sobic.005G073300 limonoid UDP-glucosyltransferase, putative, expressed -
14 Sobic.001G309666 - -
15 Sobic.007G072700 - -
16 Sobic.001G468900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
17 Sobic.010G215201 - -
18 Sobic.004G282200 DUF623 domain containing protein, expressed -
19 Sobic.001G071500 - -
20 Sobic.003G149700 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase


Gene co-expression network
sample Sobic006G056300 Sobic006G056300 Sobic005G183700 Sobic005G183700 Sobic006G056300--Sobic005G183700 Sobic001G421450 Sobic001G421450 Sobic006G056300--Sobic001G421450 Sobic002G172300 Sobic002G172300 Sobic006G056300--Sobic002G172300 Sobic001G371650 Sobic001G371650 Sobic006G056300--Sobic001G371650 Sobic004G264800 Sobic004G264800 Sobic006G056300--Sobic004G264800 Sobic002G132201 Sobic002G132201 Sobic006G056300--Sobic002G132201 Sobic003G253650 Sobic003G253650 Sobic006G056300--Sobic003G253650 Sobic007G077600 Sobic007G077600 Sobic006G056300--Sobic007G077600 Sobic007G032200 Sobic007G032200 Sobic006G056300--Sobic007G032200 Sobic005G183700--Sobic006G056300 Sobic003G245000 Sobic003G245000 Sobic005G183700--Sobic003G245000 Sobic006G141200 Sobic006G141200 Sobic005G183700--Sobic006G141200 Sobic005G183700--Sobic001G421450 Sobic005G183700--Sobic002G132201 Sobic007G007100 Sobic007G007100 Sobic005G183700--Sobic007G007100 Sobic001G273950 Sobic001G273950 Sobic005G183700--Sobic001G273950 Sobic005G183700--Sobic003G253650 Sobic003G149700 Sobic003G149700 Sobic005G183700--Sobic003G149700 Sobic001G421450--Sobic003G245000 Sobic001G421450--Sobic003G149700 Sobic001G084133 Sobic001G084133 Sobic001G421450--Sobic001G084133 Sobic005G150250 Sobic005G150250 Sobic001G421450--Sobic005G150250 Sobic003G193900 Sobic003G193900 Sobic001G421450--Sobic003G193900 Sobic001G421450--Sobic002G132201 Sobic003G356500 Sobic003G356500 Sobic001G421450--Sobic003G356500 Sobic006G222200 Sobic006G222200 Sobic001G421450--Sobic006G222200 Sobic006G155400 Sobic006G155400 Sobic001G421450--Sobic006G155400 Sobic002G054800 Sobic002G054800 Sobic002G172300--Sobic002G054800 Sobic001G071500 Sobic001G071500 Sobic002G172300--Sobic001G071500 Sobic008G030801 Sobic008G030801 Sobic002G172300--Sobic008G030801 Sobic010G215201 Sobic010G215201 Sobic002G172300--Sobic010G215201 Sobic005G073300 Sobic005G073300 Sobic002G172300--Sobic005G073300 Sobic002G172300--Sobic002G132201 Sobic002G240200 Sobic002G240200 Sobic002G172300--Sobic002G240200 Sobic002G172300--Sobic001G371650 Sobic001G421100 Sobic001G421100 Sobic002G172300--Sobic001G421100 Sobic001G371650--Sobic002G054800 Sobic001G371650--Sobic002G240200 Sobic001G371650--Sobic002G132201 Sobic001G371650--Sobic001G071500 Sobic001G371650--Sobic010G215201 Sobic001G371650--Sobic005G073300 Sobic001G371650--Sobic007G032200 Sobic001G371650--Sobic008G030801 Sobic001G371650--Sobic002G172300 Sobic007G072700 Sobic007G072700 Sobic004G264800--Sobic007G072700 Sobic007G156400 Sobic007G156400 Sobic004G264800--Sobic007G156400 Sobic004G282200 Sobic004G282200 Sobic004G264800--Sobic004G282200 Sobic004G264800--Sobic003G253650 Sobic004G264800--Sobic002G172300 Sobic004G264800--Sobic001G371650 Sobic004G264800--Sobic008G030801 Sobic003G229900 Sobic003G229900 Sobic004G264800--Sobic003G229900 Sobic010G011500 Sobic010G011500 Sobic004G264800--Sobic010G011500 Sobic002G132201--Sobic002G054800 Sobic002G132201--Sobic005G073300 Sobic002G132201--Sobic003G149700 Sobic002G132201--Sobic001G071500 Sobic002G132201--Sobic002G240200 Sobic009G022600 Sobic009G022600 Sobic002G132201--Sobic009G022600 Sobic002G132201--Sobic010G215201 Sobic002G132201--Sobic001G371650 Sobic002G132201--Sobic006G155400 Sobic003G253650--Sobic002G054800 Sobic003G253650--Sobic001G421100 Sobic003G253650--Sobic002G132201 Sobic003G253650--Sobic008G030801 Sobic003G253650--Sobic001G071500 Sobic003G253650--Sobic006G141200 Sobic003G253650--Sobic007G072700 Sobic003G253650--Sobic002G172300 Sobic003G253650--Sobic005G073300 Sobic007G077600--Sobic006G056300 Sobic001G309666 Sobic001G309666 Sobic007G077600--Sobic001G309666 Sobic010G083300 Sobic010G083300 Sobic007G077600--Sobic010G083300 Sobic005G186200 Sobic005G186200 Sobic007G077600--Sobic005G186200 Sobic005G207300 Sobic005G207300 Sobic007G077600--Sobic005G207300 Sobic008G161900 Sobic008G161900 Sobic007G077600--Sobic008G161900 Sobic009G149000 Sobic009G149000 Sobic007G077600--Sobic009G149000 Sobic007G077600--Sobic005G183700 Sobic007G077600--Sobic002G172300 Sobic007G032200--Sobic001G371650 Sobic007G032200--Sobic002G132201 Sobic007G032200--Sobic002G054800 Sobic007G032200--Sobic002G240200 Sobic007G032200--Sobic004G282200 Sobic007G032200--Sobic005G073300 Sobic003G048900 Sobic003G048900 Sobic007G032200--Sobic003G048900 Sobic007G032200--Sobic001G071500 Sobic007G032200--Sobic009G022600
Octagon: transcription factors


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