Gene annotation
Transcriptome id Sobic.006G182500.2
Synonym Sb06g025690
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5YE29
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G53500 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os04g48010.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010181
Brachypodium KQJ84094
Barley HORVU2Hr1G095410.8 , HORVU2Hr1G095410.5 , HORVU2Hr1G095410.4 , HORVU2Hr1G095410.7 , HORVU2Hr1G095410.6 , HORVU2Hr1G095410.1 , HORVU2Hr1G095410.3 , HORVU2Hr1G095410.2
Wheat TraesCS2A02G402000 , TraesCS2B02G420100 , TraesCS2D02G399400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
2 Sobic.010G165100 expressed protein -
3 Sobic.002G246000 expressed protein -
4 Sobic.002G045200 protein kinase, putative, expressed -
5 Sobic.002G142500 expressed protein -
6 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
7 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
8 Sobic.010G211700 - -
9 Sobic.001G389600 expressed protein -
10 Sobic.003G400600 BHLH transcription factor, putative, expressed -
11 Sobic.003G031700 protein kinase family protein, putative, expressed -
12 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
13 Sobic.006G274866 - -
14 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
15 Sobic.006G241800 receptor kinase, putative, expressed -
16 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
17 Sobic.002G164700 ZOS9-04 - C2H2 zinc finger protein, expressed -
18 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.002G362700 zinc finger family protein, putative, expressed -
20 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -


Gene co-expression network
sample Sobic006G182500 Sobic006G182500 Sobic001G074100 Sobic001G074100 Sobic006G182500--Sobic001G074100 Sobic010G165100 Sobic010G165100 Sobic006G182500--Sobic010G165100 Sobic002G246000 Sobic002G246000 Sobic006G182500--Sobic002G246000 Sobic002G045200 Sobic002G045200 Sobic006G182500--Sobic002G045200 Sobic002G142500 Sobic002G142500 Sobic006G182500--Sobic002G142500 Sobic003G018700 Sobic003G018700 Sobic006G182500--Sobic003G018700 Sobic010G211800 Sobic010G211800 Sobic006G182500--Sobic010G211800 Sobic010G211700 Sobic010G211700 Sobic006G182500--Sobic010G211700 Sobic001G389600 Sobic001G389600 Sobic006G182500--Sobic001G389600 Sobic001G381100 Sobic001G381100 Sobic001G074100--Sobic001G381100 Sobic003G031700 Sobic003G031700 Sobic001G074100--Sobic003G031700 Sobic002G362700 Sobic002G362700 Sobic001G074100--Sobic002G362700 Sobic006G241800 Sobic006G241800 Sobic001G074100--Sobic006G241800 Sobic001G074100--Sobic010G211800 Sobic001G074100--Sobic002G045200 Sobic003G291000 Sobic003G291000 Sobic001G074100--Sobic003G291000 Sobic009G124800 Sobic009G124800 Sobic001G074100--Sobic009G124800 Sobic001G074100--Sobic010G211700 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic006G274866 Sobic006G274866 Sobic010G165100--Sobic006G274866 Sobic002G403000 Sobic002G403000 Sobic010G165100--Sobic002G403000 Sobic006G032800 Sobic006G032800 Sobic010G165100--Sobic006G032800 Sobic002G311000 Sobic002G311000 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800 Sobic002G246000--Sobic010G165100 Sobic002G246000--Sobic001G389600 Sobic002G246000--Sobic002G045200 Sobic002G246000--Sobic002G142500 Sobic002G246000--Sobic006G032800 Sobic010G107200 Sobic010G107200 Sobic002G246000--Sobic010G107200 Sobic002G246000--Sobic002G311000 Sobic002G246000--Sobic002G403000 Sobic003G277200 Sobic003G277200 Sobic002G246000--Sobic003G277200 Sobic002G045200--Sobic001G389600 Sobic002G045200--Sobic010G211800 Sobic002G045200--Sobic001G074100 Sobic002G045200--Sobic010G165100 Sobic002G045200--Sobic006G241800 Sobic001G522300 Sobic001G522300 Sobic002G045200--Sobic001G522300 Sobic002G045200--Sobic002G362700 Sobic002G045200--Sobic002G311000 Sobic002G045200--Sobic002G142500 Sobic002G142500--Sobic006G274866 Sobic006G257200 Sobic006G257200 Sobic002G142500--Sobic006G257200 Sobic002G142500--Sobic001G389600 Sobic002G142500--Sobic010G165100 Sobic002G142500--Sobic002G311000 Sobic009G235700 Sobic009G235700 Sobic002G142500--Sobic009G235700 Sobic002G142500--Sobic002G045200 Sobic002G142500--Sobic002G246000 Sobic002G142500--Sobic006G241800 Sobic010G020600 Sobic010G020600 Sobic003G018700--Sobic010G020600 Sobic003G018700--Sobic006G241800 Sobic004G248100 Sobic004G248100 Sobic003G018700--Sobic004G248100 Sobic002G164700 Sobic002G164700 Sobic003G018700--Sobic002G164700 Sobic003G018700--Sobic001G381100 Sobic004G317200 Sobic004G317200 Sobic003G018700--Sobic004G317200 Sobic003G018700--Sobic006G032800 Sobic006G044200 Sobic006G044200 Sobic003G018700--Sobic006G044200 Sobic003G018700--Sobic001G074100 Sobic010G211800--Sobic010G211700 Sobic002G360500 Sobic002G360500 Sobic010G211800--Sobic002G360500 Sobic002G417000 Sobic002G417000 Sobic010G211800--Sobic002G417000 Sobic010G211800--Sobic003G031700 Sobic010G211800--Sobic002G045200 Sobic010G211800--Sobic001G074100 Sobic010G211800--Sobic002G362700 Sobic010G211800--Sobic006G241800 Sobic008G096200 Sobic008G096200 Sobic010G211800--Sobic008G096200 Sobic010G211700--Sobic010G211800 Sobic010G211700--Sobic002G360500 Sobic010G211700--Sobic001G074100 Sobic010G211700--Sobic002G417000 Sobic010G211700--Sobic001G381100 Sobic010G211700--Sobic006G241800 Sobic001G518000 Sobic001G518000 Sobic010G211700--Sobic001G518000 Sobic008G093600 Sobic008G093600 Sobic010G211700--Sobic008G093600 Sobic010G024500 Sobic010G024500 Sobic010G211700--Sobic010G024500 Sobic001G389600--Sobic002G403000 Sobic001G389600--Sobic010G165100 Sobic001G478100 Sobic001G478100 Sobic001G389600--Sobic001G478100 Sobic001G389600--Sobic002G045200 Sobic001G389600--Sobic010G107200 Sobic001G389600--Sobic002G142500 Sobic001G389600--Sobic002G246000 Sobic002G428000 Sobic002G428000 Sobic001G389600--Sobic002G428000 Sobic001G389600--Sobic006G032800
Octagon: transcription factors


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