Gene annotation
Transcriptome id Sobic.006G196700.1
Synonym Sb06g026900, LEA18
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
late embryogenesis abundant group 1, putative, expressed
UniProt C5YEZ2
Pfam PF03760
Panther DB PTHR33493 PTHR33493:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009790; embryo development


Orthologs (automatic annotation)
TAIR AT2G35300 : Late embryogenesis abundant protein, group 1 protein
RAP-DB (Rice) LOC_Os04g49980.1 : late embryogenesis abundant group 1, putative, expressed
MaizeGDB (Corn) Zm00025a056718
Brachypodium KQJ84290
Barley HORVU2Hr1G105740.1 , HORVU2Hr1G105760.1 , HORVU2Hr1G105760.2
Wheat TraesCS2D02G449200
Populus -


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cDNA sequences
Sobic.006G196700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G261000 cytochrome P450, putative, expressed -
2 Sobic.002G269700 - -
3 Sobic.003G241400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@seed maturation protein PM41, putative, expressed -
4 Sobic.007G075200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
5 Sobic.006G018500 - -
6 Sobic.002G213050 - -
7 Sobic.009G214700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@bHelix-loop-helix transcription factor, putative, expressed -
8 Sobic.005G199500 OsFBL58 - F-box domain and LRR containing protein, expressed -
9 Sobic.003G389500 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.007G218550 - -
11 Sobic.001G267950 - -
12 Sobic.010G262650 - K14553: U3 small nucleolar RNA-associated protein 18
13 Sobic.007G069750 - -
14 Sobic.002G333200 OsFBX248 - F-box domain containing protein, expressed -
15 Sobic.009G150800 indole-3-acetate beta-glucosyltransferase, putative, expressed -
16 Sobic.004G196000 late embryogenesis abundant protein D-34, putative, expressed -
17 Sobic.001G530650 - -
18 Sobic.001G497750 - -
19 Sobic.007G005800 OsFBL38 - F-box domain and LRR containing protein, expressed -
20 Sobic.001G388100 Up-reguralion under drought(PubMedID : 24916767)@Late embryogenesis abundant protein 1("PubMedID : 26759170,PubMedID : 24597475")@late embryogenesis abundant protein 1, putative, expressed -


Gene co-expression network
sample Sobic006G196700 Sobic006G196700 Sobic006G261000 Sobic006G261000 Sobic006G196700--Sobic006G261000 Sobic002G269700 Sobic002G269700 Sobic006G196700--Sobic002G269700 Sobic003G241400 Sobic003G241400 Sobic006G196700--Sobic003G241400 Sobic007G075200 Sobic007G075200 Sobic006G196700--Sobic007G075200 Sobic006G018500 Sobic006G018500 Sobic006G196700--Sobic006G018500 Sobic002G213050 Sobic002G213050 Sobic006G196700--Sobic002G213050 Sobic009G214700 Sobic009G214700 Sobic006G196700--Sobic009G214700 Sobic005G199500 Sobic005G199500 Sobic006G196700--Sobic005G199500 Sobic003G389500 Sobic003G389500 Sobic006G196700--Sobic003G389500 Sobic006G261000--Sobic007G075200 Sobic006G261000--Sobic009G214700 Sobic006G261000--Sobic006G018500 Sobic006G261000--Sobic003G241400 Sobic006G261000--Sobic003G389500 Sobic004G196000 Sobic004G196000 Sobic006G261000--Sobic004G196000 Sobic001G267950 Sobic001G267950 Sobic006G261000--Sobic001G267950 Sobic006G261000--Sobic005G199500 Sobic006G261000--Sobic002G213050 Sobic002G269700--Sobic002G213050 Sobic007G218550 Sobic007G218550 Sobic002G269700--Sobic007G218550 Sobic007G069750 Sobic007G069750 Sobic002G269700--Sobic007G069750 Sobic002G269700--Sobic006G196700 Sobic002G269700--Sobic005G199500 Sobic002G152400 Sobic002G152400 Sobic002G269700--Sobic002G152400 Sobic002G269700--Sobic006G018500 Sobic001G112300 Sobic001G112300 Sobic002G269700--Sobic001G112300 Sobic010G129900 Sobic010G129900 Sobic002G269700--Sobic010G129900 Sobic003G241400--Sobic006G261000 Sobic009G150800 Sobic009G150800 Sobic003G241400--Sobic009G150800 Sobic001G388100 Sobic001G388100 Sobic003G241400--Sobic001G388100 Sobic001G495850 Sobic001G495850 Sobic003G241400--Sobic001G495850 Sobic003G241400--Sobic009G214700 Sobic003G241400--Sobic007G075200 Sobic003G241400--Sobic003G389500 Sobic003G241400--Sobic006G196700 Sobic003G241400--Sobic004G196000 Sobic007G075200--Sobic006G261000 Sobic007G075200--Sobic009G214700 Sobic008G192200 Sobic008G192200 Sobic007G075200--Sobic008G192200 Sobic003G091100 Sobic003G091100 Sobic007G075200--Sobic003G091100 SobicK042700 SobicK042700 Sobic007G075200--SobicK042700 Sobic001G272300 Sobic001G272300 Sobic007G075200--Sobic001G272300 Sobic006G018500--Sobic005G199500 Sobic006G018500--Sobic002G213050 Sobic006G018500--Sobic001G267950 Sobic006G018500--Sobic006G261000 Sobic006G018500--Sobic007G075200 Sobic001G418300 Sobic001G418300 Sobic006G018500--Sobic001G418300 Sobic006G018500--Sobic007G069750 Sobic001G472900 Sobic001G472900 Sobic006G018500--Sobic001G472900 Sobic006G018500--Sobic009G214700 Sobic002G213050--Sobic006G018500 Sobic002G213050--Sobic005G199500 Sobic002G213050--Sobic007G069750 Sobic002G213050--Sobic001G472900 Sobic002G213050--Sobic006G261000 Sobic002G213050--Sobic007G075200 Sobic002G213050--Sobic002G269700 Sobic002G213050--Sobic001G112300 Sobic002G213050--Sobic001G267950 Sobic009G214700--Sobic006G261000 Sobic009G214700--Sobic007G075200 Sobic009G214700--Sobic001G267950 Sobic003G046900 Sobic003G046900 Sobic009G214700--Sobic003G046900 Sobic009G214700--Sobic006G018500 Sobic009G214700--Sobic005G199500 Sobic003G049100 Sobic003G049100 Sobic009G214700--Sobic003G049100 Sobic009G214700--Sobic004G196000 Sobic009G214700--Sobic008G192200 Sobic005G199500--Sobic006G018500 Sobic005G199500--Sobic007G069750 Sobic005G199500--Sobic002G213050 Sobic005G199500--Sobic001G267950 Sobic005G199500--Sobic001G418300 Sobic005G199500--Sobic010G129900 Sobic005G199500--Sobic006G261000 Sobic005G199500--Sobic009G214700 Sobic005G199500--Sobic007G075200 Sobic001G379800 Sobic001G379800 Sobic003G389500--Sobic001G379800 Sobic001G493300 Sobic001G493300 Sobic003G389500--Sobic001G493300 Sobic003G389500--Sobic006G261000 Sobic003G389500--Sobic007G075200 Sobic003G389500--Sobic004G196000 Sobic003G389500--Sobic008G192200 Sobic008G192100 Sobic008G192100 Sobic003G389500--Sobic008G192100 Sobic003G389500--Sobic001G272300
Octagon: transcription factors


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