Gene annotation
Transcriptome id Sobic.006G270800.1
Synonym Sb06g033220
Functional annotation EF hand family protein, putative, expressed
UniProt C5YAM0
Pfam PF13499
Panther DB PTHR10827 PTHR10827:SF54
NCBI CDD KOG4223; Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27790 : Calcium-binding EF hand family protein
RAP-DB (Rice) LOC_Os04g58480.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a057400
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G270800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G427500 pectinesterase, putative, expressed K01051: pectinesterase
2 Sobic.006G127800 armadillo/beta-catenin repeat family protein, putative, expressed -
3 Sobic.003G147700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.003G232100 - -
5 Sobic.003G009600 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
6 Sobic.005G122100 expressed protein -
7 Sobic.009G089000 ATCHX, putative, expressed -
8 Sobic.003G114800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.009G090400 - -
10 Sobic.007G103000 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
11 Sobic.007G134260 - -
12 Sobic.003G114900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
13 Sobic.007G222200 - -
14 Sobic.001G024300 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
15 Sobic.004G091000 pectate lyase precursor, putative, expressed K01728: pectate lyase
16 Sobic.002G157900 - -
17 Sobic.009G116100 conserved hypothetical protein -
18 Sobic.005G065300 methyltransferase, putative, expressed -
19 Sobic.002G304300 integral membrane protein DUF6 domain containing protein, expressed -
20 Sobic.003G197500 protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G270800 Sobic006G270800 Sobic002G427500 Sobic002G427500 Sobic006G270800--Sobic002G427500 Sobic006G127800 Sobic006G127800 Sobic006G270800--Sobic006G127800 Sobic003G147700 Sobic003G147700 Sobic006G270800--Sobic003G147700 Sobic003G232100 Sobic003G232100 Sobic006G270800--Sobic003G232100 Sobic003G009600 Sobic003G009600 Sobic006G270800--Sobic003G009600 Sobic005G122100 Sobic005G122100 Sobic006G270800--Sobic005G122100 Sobic009G089000 Sobic009G089000 Sobic006G270800--Sobic009G089000 Sobic003G114800 Sobic003G114800 Sobic006G270800--Sobic003G114800 Sobic009G090400 Sobic009G090400 Sobic006G270800--Sobic009G090400 Sobic002G427500--Sobic006G270800 Sobic002G427500--Sobic006G127800 Sobic002G427500--Sobic003G009600 Sobic002G427500--Sobic009G089000 Sobic003G114900 Sobic003G114900 Sobic002G427500--Sobic003G114900 Sobic002G427500--Sobic003G147700 Sobic001G024300 Sobic001G024300 Sobic002G427500--Sobic001G024300 Sobic002G427500--Sobic005G122100 Sobic002G427500--Sobic009G090400 Sobic006G127800--Sobic002G427500 Sobic006G127800--Sobic006G270800 Sobic006G127800--Sobic003G114900 Sobic006G127800--Sobic003G009600 Sobic006G127800--Sobic009G089000 Sobic006G127800--Sobic003G147700 Sobic006G127800--Sobic005G122100 Sobic006G127800--Sobic003G232100 Sobic006G127800--Sobic001G024300 Sobic003G147700--Sobic003G114800 Sobic003G147700--Sobic006G270800 Sobic007G103000 Sobic007G103000 Sobic003G147700--Sobic007G103000 Sobic007G134260 Sobic007G134260 Sobic003G147700--Sobic007G134260 Sobic003G147700--Sobic002G427500 Sobic004G091000 Sobic004G091000 Sobic003G147700--Sobic004G091000 Sobic003G147700--Sobic006G127800 Sobic003G147700--Sobic005G122100 Sobic003G147700--Sobic003G232100 Sobic003G232100--Sobic007G134260 Sobic003G232100--Sobic006G270800 Sobic003G232100--Sobic007G103000 Sobic003G232100--Sobic005G122100 Sobic003G232100--Sobic004G091000 Sobic003G232100--Sobic003G114800 Sobic003G232100--Sobic003G147700 Sobic003G232100--Sobic002G427500 Sobic003G232100--Sobic006G127800 Sobic003G009600--Sobic001G024300 Sobic003G009600--Sobic002G427500 Sobic009G116100 Sobic009G116100 Sobic003G009600--Sobic009G116100 Sobic003G009600--Sobic009G089000 Sobic007G222200 Sobic007G222200 Sobic003G009600--Sobic007G222200 Sobic003G009600--Sobic006G270800 Sobic003G009600--Sobic006G127800 Sobic003G009600--Sobic009G090400 Sobic006G136700 Sobic006G136700 Sobic003G009600--Sobic006G136700 Sobic005G122100--Sobic009G090400 Sobic005G122100--Sobic007G103000 Sobic005G122100--Sobic007G134260 Sobic005G122100--Sobic007G222200 Sobic005G122100--Sobic006G270800 Sobic005G122100--Sobic003G232100 Sobic002G157900 Sobic002G157900 Sobic005G122100--Sobic002G157900 Sobic005G122100--Sobic003G147700 Sobic005G122100--Sobic002G427500 Sobic009G089000--Sobic002G427500 Sobic009G089000--Sobic003G009600 Sobic009G089000--Sobic001G024300 Sobic009G089000--Sobic009G116100 Sobic009G089000--Sobic006G127800 Sobic009G089000--Sobic006G270800 Sobic009G089000--Sobic009G090400 Sobic009G089000--Sobic006G136700 Sobic009G089000--Sobic007G222200 Sobic003G114800--Sobic004G091000 Sobic003G114800--Sobic003G147700 Sobic003G114800--Sobic007G134260 Sobic005G000200 Sobic005G000200 Sobic003G114800--Sobic005G000200 Sobic003G114800--Sobic007G103000 Sobic003G114800--Sobic003G232100 Sobic003G114800--Sobic006G270800 Sobic008G079200 Sobic008G079200 Sobic003G114800--Sobic008G079200 Sobic003G114800--Sobic005G122100 Sobic009G090400--Sobic002G157900 Sobic009G090400--Sobic007G222200 Sobic009G090400--Sobic005G122100 Sobic009G090400--Sobic001G024300 Sobic002G417401 Sobic002G417401 Sobic009G090400--Sobic002G417401 Sobic009G090400--Sobic003G009600 Sobic009G090400--Sobic006G136700 Sobic001G332200 Sobic001G332200 Sobic009G090400--Sobic001G332200 Sobic009G090400--Sobic009G116100
Octagon: transcription factors


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