Gene annotation
Transcriptome id Sobic.007G027800.2
Synonym CLPC1, Sb07g002440, DCA1, CLPC, ATHSP93-V, HSP93-V
Functional annotation ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
UniProt A0A1Z5R7U3
Pfam PF10431 PF07728 PF00004
Panther DB PTHR11638 PTHR11638:SF102
NCBI CDD -
KEGG Orthology K03696; ATP-dependent Clp protease ATP-binding subunit ClpC
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G48870 : Clp ATPase
RAP-DB (Rice) LOC_Os11g16770.1 : ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ88668 , KQJ88669
Barley -
Wheat TraesCS4B02G082900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G249266 - -
2 Sobic.002G090100 - -
3 Sobic.002G090100 - -
4 Sobic.002G090100 - -
5 Sobic.002G090100 - -
6 Sobic.002G090100 - -
7 Sobic.002G090100 - -
8 Sobic.001G381400 expressed protein -
9 Sobic.002G239450 - -
10 Sobic.002G390000 dirigent, putative, expressed -
11 Sobic.007G159100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed -
12 Sobic.008G079500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.002G102132 - -
14 Sobic.004G263100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
15 Sobic.007G067616 - -
16 Sobic.002G238600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
17 Sobic.004G094900 expressed protein -
18 Sobic.001G102150 - -
19 Sobic.001G138200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase 8 domain containing protein, putative, expressed -
20 Sobic.005G171001 - -


Gene co-expression network
sample Sobic007G027800 Sobic007G027800 Sobic001G249266 Sobic001G249266 Sobic007G027800--Sobic001G249266 Sobic002G090100 Sobic002G090100 Sobic007G027800--Sobic002G090100 Sobic001G381400 Sobic001G381400 Sobic007G027800--Sobic001G381400 Sobic002G239450 Sobic002G239450 Sobic007G027800--Sobic002G239450 Sobic001G249266--Sobic002G090100 Sobic001G249266--Sobic001G381400 Sobic002G390000 Sobic002G390000 Sobic001G249266--Sobic002G390000 Sobic007G159100 Sobic007G159100 Sobic001G249266--Sobic007G159100 Sobic002G090100--Sobic002G090100 Sobic002G090100--Sobic001G381400 Sobic002G090100--Sobic007G159100 Sobic002G102132 Sobic002G102132 Sobic002G090100--Sobic002G102132 Sobic004G263100 Sobic004G263100 Sobic002G090100--Sobic004G263100 Sobic001G381400--Sobic002G090100 Sobic004G094900 Sobic004G094900 Sobic001G381400--Sobic004G094900 Sobic001G381400--Sobic002G390000 Sobic001G381400--Sobic007G159100 Sobic002G239450--Sobic002G090100 Sobic002G239450--Sobic001G381400 Sobic008G079500 Sobic008G079500 Sobic002G239450--Sobic008G079500 Sobic001G327500 Sobic001G327500 Sobic002G239450--Sobic001G327500
Octagon: transcription factors


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