Gene annotation
| Transcriptome id | Sobic.007G055700.1 |
|---|---|
| Synonym | terpene synthase, SbTPS2;terpene synthase, Sb07g004485, SbTPS2 |
| Functional annotation | "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm" (PubMedID : 21880075) Protein terpene synthase 10 (Os) (PubMedID : 27208977) terpene synthase, putative, expressed |
| UniProt | C5YHI1 , C5YHI2 |
| Pfam | PF01397 PF03936 |
| Panther DB | PTHR31225 PTHR31225:SF7 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016829; lyase activity GO:0010333terpene synthase activity GO:0008152metabolic process GO:0000287magnesium ion binding |
Orthologs (automatic annotation)
| TAIR | AT3G14490 : Terpenoid cyclases/Protein prenyltransferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g07080.1 : terpene synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a055049 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G016900 | CRP11 - Cysteine-rich family protein precursor, expressed | - |
| 2 | Sobic.007G073750 | - | - |
| 3 | Sobic.010G253500 | cycloartenol synthase, putative, expressed | K19011: achilleol B synthase |
| 4 | Sobic.001G164100 | cytochrome P450, putative, expressed | - |
| 5 | Sobic.007G143100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 6 | Sobic.003G397400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 7 | Sobic.007G143200 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 8 | Sobic.009G068900 | WRKY67, expressed | - |
| 9 | Sobic.005G158000 | cytochrome P450 71E1, putative, expressed | K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase |
| 10 | Sobic.009G076700 | expressed protein | - |
| 11 | Sobic.009G064400 | cytochrome P450 71A1, putative, expressed | - |
| 12 | Sobic.008G075600 | - | - |
| 13 | Sobic.001G210250 | - | - |
| 14 | Sobic.001G086500 | down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS14 - MADS-box family gene with MIKCc type-box, expressed | K09264: MADS-box transcription factor, plant |
| 15 | Sobic.007G169600 | L1P family of ribosomal proteins domain containing protein, expressed | K02865: RP-L10Ae, large subunit ribosomal protein L10Ae |
| 16 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 17 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 18 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 19 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 20 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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