Gene annotation
Transcriptome id Sobic.007G179200.1
Synonym Sb07g025030, PBA1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5YH49
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF4
NCBI CDD KOG0174; 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3
KEGG Orthology K02738; 20S proteasome subunit beta 1
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT4G31300 : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
RAP-DB (Rice) LOC_Os06g04800.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a050090 , Zm00025a041460
Brachypodium KQK19925
Barley -
Wheat TraesCS1B02G443900 , TraesCS7D02G078000 , TraesCS7A02G083200 , TraesCS1D02G421300
Populus -


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cDNA sequences
Sobic.007G179200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G052250 - -
2 Sobic.001G136850 - -
3 Sobic.003G169700 - -
4 Sobic.004G303900 - -
5 Sobic.006G100150 - -
6 Sobic.006G263250 - -
7 Sobic.007G190466 - -
8 Sobic.009G260550 - -
9 Sobic.006G059150 - -
10 Sobic.007G028300 - -
11 Sobic.006G146700 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
12 Sobic.009G218700 pentatricopeptide, putative, expressed -
13 Sobic.003G163000 - -
14 Sobic.007G078700 - -
15 Sobic.004G276600 expressed protein -
16 Sobic.006G261650 - -
17 Sobic.002G053300 mla1, putative, expressed -
18 Sobic.006G206600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine phosphatase, putative, expressed -
19 Sobic.001G093400 - -
20 Sobic.002G337400 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic007G179200 Sobic007G179200 Sobic006G052250 Sobic006G052250 Sobic007G179200--Sobic006G052250 Sobic001G136850 Sobic001G136850 Sobic007G179200--Sobic001G136850 Sobic003G169700 Sobic003G169700 Sobic007G179200--Sobic003G169700 Sobic004G303900 Sobic004G303900 Sobic007G179200--Sobic004G303900 Sobic006G100150 Sobic006G100150 Sobic007G179200--Sobic006G100150 Sobic006G263250 Sobic006G263250 Sobic007G179200--Sobic006G263250 Sobic007G190466 Sobic007G190466 Sobic007G179200--Sobic007G190466 Sobic009G260550 Sobic009G260550 Sobic007G179200--Sobic009G260550 Sobic006G059150 Sobic006G059150 Sobic007G179200--Sobic006G059150 Sobic007G078700 Sobic007G078700 Sobic006G052250--Sobic007G078700 Sobic006G052250--Sobic001G136850 Sobic006G146700 Sobic006G146700 Sobic006G052250--Sobic006G146700 Sobic002G074900 Sobic002G074900 Sobic006G052250--Sobic002G074900 Sobic005G019250 Sobic005G019250 Sobic006G052250--Sobic005G019250 Sobic001G202450 Sobic001G202450 Sobic006G052250--Sobic001G202450 Sobic006G052250--Sobic007G190466 Sobic003G163000 Sobic003G163000 Sobic006G052250--Sobic003G163000 Sobic005G180850 Sobic005G180850 Sobic006G052250--Sobic005G180850 Sobic001G136850--Sobic009G260550 Sobic001G136850--Sobic006G052250 Sobic001G136850--Sobic006G263250 Sobic001G136850--Sobic003G169700 Sobic001G093400 Sobic001G093400 Sobic001G136850--Sobic001G093400 Sobic001G136850--Sobic006G146700 Sobic004G276600 Sobic004G276600 Sobic001G136850--Sobic004G276600 Sobic001G136850--Sobic007G078700 Sobic001G136850--Sobic002G074900 Sobic003G169700--Sobic001G093400 Sobic003G169700--Sobic009G260550 Sobic001G420150 Sobic001G420150 Sobic003G169700--Sobic001G420150 Sobic007G116300 Sobic007G116300 Sobic003G169700--Sobic007G116300 Sobic003G169700--Sobic004G303900 Sobic003G169700--Sobic006G100150 Sobic003G208200 Sobic003G208200 Sobic003G169700--Sobic003G208200 Sobic003G169700--Sobic004G276600 Sobic007G085400 Sobic007G085400 Sobic003G169700--Sobic007G085400 Sobic004G303900--Sobic006G100150 Sobic007G028300 Sobic007G028300 Sobic004G303900--Sobic007G028300 Sobic004G078200 Sobic004G078200 Sobic004G303900--Sobic004G078200 Sobic004G303900--Sobic009G260550 Sobic004G303900--Sobic003G169700 Sobic004G252600 Sobic004G252600 Sobic004G303900--Sobic004G252600 Sobic004G303900--Sobic003G163000 Sobic006G206600 Sobic006G206600 Sobic004G303900--Sobic006G206600 Sobic004G207800 Sobic004G207800 Sobic004G303900--Sobic004G207800 Sobic006G100150--Sobic004G303900 Sobic006G100150--Sobic004G078200 Sobic006G100150--Sobic007G028300 Sobic006G100150--Sobic009G260550 Sobic006G100150--Sobic004G252600 Sobic006G100150--Sobic003G169700 Sobic001G118050 Sobic001G118050 Sobic006G100150--Sobic001G118050 Sobic006G100150--Sobic004G207800 Sobic006G100150--Sobic006G206600 Sobic006G263250--Sobic001G136850 Sobic006G263250--Sobic006G146700 Sobic006G263250--Sobic006G059150 Sobic006G263250--Sobic001G118050 Sobic006G263250--Sobic006G100150 Sobic001G039750 Sobic001G039750 Sobic006G263250--Sobic001G039750 Sobic001G470700 Sobic001G470700 Sobic006G263250--Sobic001G470700 Sobic006G263250--Sobic004G252600 Sobic006G263250--Sobic009G260550 Sobic007G190600 Sobic007G190600 Sobic007G190466--Sobic007G190600 Sobic007G190466--Sobic004G276600 Sobic007G190466--Sobic001G420150 Sobic007G190466--Sobic006G059150 Sobic004G127766 Sobic004G127766 Sobic007G190466--Sobic004G127766 Sobic007G190466--Sobic007G116300 Sobic007G090433 Sobic007G090433 Sobic007G190466--Sobic007G090433 Sobic001G431600 Sobic001G431600 Sobic007G190466--Sobic001G431600 Sobic008G100801 Sobic008G100801 Sobic007G190466--Sobic008G100801 Sobic009G260550--Sobic001G093400 Sobic009G260550--Sobic003G169700 Sobic009G260550--Sobic007G116300 Sobic009G260550--Sobic004G252600 Sobic009G260550--Sobic006G100150 Sobic009G260550--Sobic004G303900 Sobic009G260550--Sobic001G420150 Sobic009G260550--Sobic001G136850 Sobic009G257000 Sobic009G257000 Sobic009G260550--Sobic009G257000 Sobic010G053700 Sobic010G053700 Sobic006G059150--Sobic010G053700 Sobic006G059150--Sobic007G116300 Sobic006G059150--Sobic001G420150 Sobic006G059150--Sobic004G276600 Sobic006G059150--Sobic007G190466 Sobic006G059150--Sobic001G093400 Sobic004G129400 Sobic004G129400 Sobic006G059150--Sobic004G129400 Sobic006G059150--Sobic007G190600 Sobic001G423200 Sobic001G423200 Sobic006G059150--Sobic001G423200
Octagon: transcription factors


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