Gene annotation
Transcriptome id Sobic.008G054200.2,Sobic.008G054200.1
Synonym Sb08g004590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
csAtPR5, putative, expressed
UniProt A0A1B6PBD3 , A0A1Z5R527
Pfam -
Panther DB PTHR33065 PTHR33065 PTHR33065:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os12g07500.1 : csAtPR5, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G078200 EDM2, putative, expressed -
2 Sobic.004G064200 STE_PAK_Ste20_STLK.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
3 Sobic.003G014200 protein kinase domain containing protein, expressed K08818: cell division cycle 2-like
4 Sobic.004G168200 ATPase, AAA family protein, expressed -
5 Sobic.009G068400 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
6 Sobic.007G198900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
8 Sobic.004G046700 OsFBLD3 - F-box, LRR and FBD domain containing protein, expressed -
9 Sobic.001G211700 MBTB33 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.010G123800 expressed protein -
11 Sobic.006G017900 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
12 Sobic.007G081800 MBTB22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.007G112500 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
14 Sobic.005G058300 expressed protein -
15 Sobic.006G017700 expressed protein -
16 Sobic.002G182701 - -
17 Sobic.002G384900 expressed protein -
18 Sobic.003G191200 expressed protein -
19 Sobic.007G167950 - -
20 Sobic.005G087732 - -


Gene co-expression network
sample Sobic008G054200 Sobic008G054200 Sobic008G078200 Sobic008G078200 Sobic008G054200--Sobic008G078200 Sobic004G064200 Sobic004G064200 Sobic008G054200--Sobic004G064200 Sobic003G014200 Sobic003G014200 Sobic008G054200--Sobic003G014200 Sobic004G168200 Sobic004G168200 Sobic008G054200--Sobic004G168200 Sobic009G068400 Sobic009G068400 Sobic008G054200--Sobic009G068400 Sobic007G198900 Sobic007G198900 Sobic008G054200--Sobic007G198900 Sobic002G180800 Sobic002G180800 Sobic008G054200--Sobic002G180800 Sobic004G046700 Sobic004G046700 Sobic008G054200--Sobic004G046700 Sobic001G211700 Sobic001G211700 Sobic008G054200--Sobic001G211700 Sobic005G058300 Sobic005G058300 Sobic008G078200--Sobic005G058300 Sobic007G167950 Sobic007G167950 Sobic008G078200--Sobic007G167950 Sobic005G087732 Sobic005G087732 Sobic008G078200--Sobic005G087732 Sobic007G081800 Sobic007G081800 Sobic008G078200--Sobic007G081800 Sobic010G123800 Sobic010G123800 Sobic008G078200--Sobic010G123800 Sobic008G078200--Sobic004G046700 Sobic007G110800 Sobic007G110800 Sobic008G078200--Sobic007G110800 Sobic004G086900 Sobic004G086900 Sobic008G078200--Sobic004G086900 Sobic006G224400 Sobic006G224400 Sobic008G078200--Sobic006G224400 Sobic010G114200 Sobic010G114200 Sobic004G064200--Sobic010G114200 Sobic004G064200--Sobic003G014200 Sobic006G143900 Sobic006G143900 Sobic004G064200--Sobic006G143900 Sobic010G179600 Sobic010G179600 Sobic004G064200--Sobic010G179600 Sobic004G064200--Sobic009G068400 Sobic001G117100 Sobic001G117100 Sobic004G064200--Sobic001G117100 Sobic001G225800 Sobic001G225800 Sobic004G064200--Sobic001G225800 Sobic009G152000 Sobic009G152000 Sobic004G064200--Sobic009G152000 Sobic008G036100 Sobic008G036100 Sobic004G064200--Sobic008G036100 Sobic002G073600 Sobic002G073600 Sobic003G014200--Sobic002G073600 Sobic009G256601 Sobic009G256601 Sobic003G014200--Sobic009G256601 Sobic005G054401 Sobic005G054401 Sobic003G014200--Sobic005G054401 Sobic003G133000 Sobic003G133000 Sobic003G014200--Sobic003G133000 Sobic001G269100 Sobic001G269100 Sobic003G014200--Sobic001G269100 Sobic003G351100 Sobic003G351100 Sobic003G014200--Sobic003G351100 Sobic010G240300 Sobic010G240300 Sobic003G014200--Sobic010G240300 Sobic006G005300 Sobic006G005300 Sobic003G014200--Sobic006G005300 Sobic007G160501 Sobic007G160501 Sobic003G014200--Sobic007G160501 Sobic004G168200--Sobic001G211700 Sobic006G017700 Sobic006G017700 Sobic004G168200--Sobic006G017700 Sobic006G017900 Sobic006G017900 Sobic004G168200--Sobic006G017900 Sobic002G182701 Sobic002G182701 Sobic004G168200--Sobic002G182701 Sobic002G384900 Sobic002G384900 Sobic004G168200--Sobic002G384900 Sobic005G049850 Sobic005G049850 Sobic004G168200--Sobic005G049850 Sobic005G000900 Sobic005G000900 Sobic004G168200--Sobic005G000900 Sobic007G082100 Sobic007G082100 Sobic004G168200--Sobic007G082100 Sobic007G031200 Sobic007G031200 Sobic004G168200--Sobic007G031200 Sobic003G070400 Sobic003G070400 Sobic009G068400--Sobic003G070400 Sobic007G197000 Sobic007G197000 Sobic009G068400--Sobic007G197000 Sobic005G037700 Sobic005G037700 Sobic009G068400--Sobic005G037700 Sobic007G204200 Sobic007G204200 Sobic009G068400--Sobic007G204200 Sobic003G004000 Sobic003G004000 Sobic009G068400--Sobic003G004000 Sobic004G192600 Sobic004G192600 Sobic009G068400--Sobic004G192600 Sobic001G089400 Sobic001G089400 Sobic009G068400--Sobic001G089400 Sobic008G074100 Sobic008G074100 Sobic009G068400--Sobic008G074100 Sobic010G121700 Sobic010G121700 Sobic009G068400--Sobic010G121700 Sobic003G191200 Sobic003G191200 Sobic007G198900--Sobic003G191200 Sobic007G198900--Sobic007G082100 Sobic007G198900--Sobic005G058300 Sobic007G198900--Sobic007G081800 Sobic007G198900--Sobic007G110800 Sobic007G198900--Sobic010G123800 Sobic007G198900--Sobic007G167950 Sobic007G198900--Sobic005G087732 Sobic007G198900--Sobic007G031200 Sobic002G180800--Sobic004G064200 Sobic006G080700 Sobic006G080700 Sobic002G180800--Sobic006G080700 Sobic002G180800--Sobic010G114200 Sobic002G180800--Sobic008G054200 Sobic002G074800 Sobic002G074800 Sobic002G180800--Sobic002G074800 Sobic009G007300 Sobic009G007300 Sobic002G180800--Sobic009G007300 Sobic002G180800--Sobic003G014200 Sobic002G103800 Sobic002G103800 Sobic002G180800--Sobic002G103800 Sobic003G024400 Sobic003G024400 Sobic002G180800--Sobic003G024400 Sobic004G046700--Sobic010G123800 Sobic004G046700--Sobic007G081800 Sobic004G046700--Sobic005G058300 Sobic004G046700--Sobic006G017900 Sobic004G046700--Sobic001G211700 Sobic004G046700--Sobic006G224400 Sobic004G046700--Sobic007G082100 Sobic004G046700--Sobic003G191200 Sobic004G046700--Sobic007G167950 Sobic001G211700--Sobic006G017900 Sobic001G211700--Sobic006G017700 Sobic001G211700--Sobic002G182701 Sobic001G211700--Sobic002G384900 Sobic001G211700--Sobic004G046700 Sobic001G211700--Sobic005G000900 Sobic001G211700--Sobic010G123800 Sobic001G211700--Sobic007G082100 Sobic004G100300 Sobic004G100300 Sobic001G211700--Sobic004G100300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.