Gene annotation
Transcriptome id Sobic.009G123733.1
Synonym -
Functional annotation -
UniProt A0A1Z5R3A3
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF51
NCBI CDD KOG0873; C-4 sterol methyl oxidase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT4G12110 : sterol-4alpha-methyl oxidase 1-1
RAP-DB (Rice) LOC_Os10g39810.1 : fatty acid hydroxylase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G092800 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
2 Sobic.004G251800 leaf senescence related protein, putative, expressed -
3 Sobic.001G187400 cytochrome P450, putative, expressed -
4 Sobic.005G050032 - -
5 Sobic.004G263100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
6 Sobic.002G388800 cytochrome P450 72A1, putative, expressed -
7 Sobic.005G013400 WRKY52, expressed -
8 Sobic.002G390000 dirigent, putative, expressed -
9 Sobic.008G079500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G381400 expressed protein -
11 Sobic.001G065900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.002G369301 - -
13 Sobic.003G370600 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
14 Sobic.007G159100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed -
15 Sobic.001G206600 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
16 Sobic.004G094900 expressed protein -
17 Sobic.003G376300 4,5-DOPA dioxygenase extradiol, putative, expressed K15777: 4,5-DOPA dioxygenase extradiol
18 Sobic.001G026950 - -
19 Sobic.006G170000 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.002G090100 - -


Gene co-expression network
sample Sobic009G123733 Sobic009G123733 Sobic004G092800 Sobic004G092800 Sobic009G123733--Sobic004G092800 Sobic004G251800 Sobic004G251800 Sobic009G123733--Sobic004G251800 Sobic001G187400 Sobic001G187400 Sobic009G123733--Sobic001G187400 Sobic005G050032 Sobic005G050032 Sobic009G123733--Sobic005G050032 Sobic004G263100 Sobic004G263100 Sobic009G123733--Sobic004G263100 Sobic002G388800 Sobic002G388800 Sobic009G123733--Sobic002G388800 Sobic005G013400 Sobic005G013400 Sobic009G123733--Sobic005G013400 Sobic002G390000 Sobic002G390000 Sobic009G123733--Sobic002G390000 Sobic008G079500 Sobic008G079500 Sobic009G123733--Sobic008G079500 Sobic001G232500 Sobic001G232500 Sobic004G092800--Sobic001G232500 Sobic001G065900 Sobic001G065900 Sobic004G092800--Sobic001G065900 Sobic003G370600 Sobic003G370600 Sobic004G092800--Sobic003G370600 Sobic004G092800--Sobic002G388800 Sobic001G425500 Sobic001G425500 Sobic004G092800--Sobic001G425500 Sobic004G092800--Sobic004G263100 Sobic009G194400 Sobic009G194400 Sobic004G092800--Sobic009G194400 Sobic002G369301 Sobic002G369301 Sobic004G092800--Sobic002G369301 Sobic006G170000 Sobic006G170000 Sobic004G092800--Sobic006G170000 Sobic004G251800--Sobic001G065900 Sobic004G251800--Sobic004G263100 Sobic004G251800--Sobic002G388800 Sobic003G060100 Sobic003G060100 Sobic004G251800--Sobic003G060100 Sobic004G094900 Sobic004G094900 Sobic004G251800--Sobic004G094900 Sobic002G100832 Sobic002G100832 Sobic004G251800--Sobic002G100832 Sobic004G251800--Sobic004G092800 Sobic004G251800--Sobic002G390000 Sobic006G057500 Sobic006G057500 Sobic004G251800--Sobic006G057500 Sobic001G187500 Sobic001G187500 Sobic001G187400--Sobic001G187500 Sobic001G187400--Sobic002G369301 Sobic001G187400--Sobic003G370600 Sobic001G187400--Sobic002G388800 Sobic001G187400--Sobic004G092800 Sobic001G187400--Sobic001G232500 Sobic007G039500 Sobic007G039500 Sobic001G187400--Sobic007G039500 Sobic001G187400--Sobic006G170000 Sobic001G187400--Sobic009G123733 Sobic005G050032--Sobic004G092800 Sobic003G376300 Sobic003G376300 Sobic005G050032--Sobic003G376300 Sobic005G050032--Sobic009G123733 Sobic005G050032--Sobic001G232500 Sobic003G207900 Sobic003G207900 Sobic005G050032--Sobic003G207900 Sobic005G050032--Sobic006G170000 Sobic005G050032--Sobic002G369301 Sobic005G050032--Sobic001G187400 Sobic002G090100 Sobic002G090100 Sobic005G050032--Sobic002G090100 Sobic002G102132 Sobic002G102132 Sobic004G263100--Sobic002G102132 Sobic007G159100 Sobic007G159100 Sobic004G263100--Sobic007G159100 Sobic004G263100--Sobic001G065900 Sobic004G263100--Sobic002G100832 Sobic004G263100--Sobic002G388800 Sobic004G165800 Sobic004G165800 Sobic004G263100--Sobic004G165800 Sobic001G381400 Sobic001G381400 Sobic004G263100--Sobic001G381400 Sobic004G263100--Sobic006G057500 Sobic004G263100--Sobic002G090100 Sobic002G388800--Sobic004G263100 Sobic005G171001 Sobic005G171001 Sobic002G388800--Sobic005G171001 Sobic002G388800--Sobic004G092800 Sobic002G388800--Sobic001G065900 Sobic002G388800--Sobic001G381400 Sobic002G388800--Sobic002G390000 Sobic002G388800--Sobic002G102132 Sobic002G388800--Sobic007G159100 Sobic002G388800--Sobic004G251800 Sobic005G013500 Sobic005G013500 Sobic005G013400--Sobic005G013500 Sobic001G206600 Sobic001G206600 Sobic005G013400--Sobic001G206600 Sobic004G246600 Sobic004G246600 Sobic005G013400--Sobic004G246600 Sobic007G148500 Sobic007G148500 Sobic005G013400--Sobic007G148500 Sobic004G229500 Sobic004G229500 Sobic005G013400--Sobic004G229500 Sobic005G013400--Sobic003G370600 Sobic005G013400--Sobic009G123733 Sobic001G143100 Sobic001G143100 Sobic005G013400--Sobic001G143100 Sobic005G013400--Sobic003G060100 Sobic002G238600 Sobic002G238600 Sobic002G390000--Sobic002G238600 Sobic002G390000--Sobic001G381400 Sobic002G390000--Sobic004G094900 Sobic002G390000--Sobic002G090100 Sobic008G079500--Sobic001G381400 Sobic008G079500--Sobic002G090100 Sobic008G079500--Sobic007G159100 Sobic008G079500--Sobic004G094900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.