Gene annotation
Transcriptome id Sobic.003G376300.2
Synonym
Functional annotation 4,5-DOPA dioxygenase extradiol, putative, expressed
UniProt A0A1W0W0S4
Pfam PF02900
Panther DB PTHR30096 PTHR30096:SF0
NCBI CDD -
KEGG Orthology K15777; 4,5-DOPA dioxygenase extradiol
Gene Ontology GO:0016491; oxidoreductase activity GO:0008198ferrous iron binding GO:0006725cellular aromatic compound metabolic process


Orthologs (automatic annotation)
TAIR AT4G15093 : catalytic LigB subunit of aromatic ring-opening dioxygenase family
RAP-DB (Rice) LOC_Os01g65680.1 : 4,5-DOPA dioxygenase extradiol, putative, expressed
MaizeGDB (Corn) Zm00025a039509 , Zm00025a026582
Brachypodium KQK10877 , KQK10876
Barley HORVU3Hr1G081590.4 , HORVU3Hr1G081590.5 , HORVU3Hr1G081590.6 , HORVU3Hr1G081590.7 , HORVU3Hr1G081590.1 , HORVU3Hr1G081590.2 , HORVU3Hr1G081590.3 , HORVU3Hr1G081590.8 , HORVU3Hr1G081590.9 , HORVU3Hr1G081580.2 , HORVU3Hr1G081580.1 , HORVU6Hr1G002390.8 , HORVU6Hr1G002390.9 , HORVU6Hr1G002390.6 , HORVU6Hr1G002390.7 , HORVU6Hr1G002390.5 , HORVU6Hr1G002390.4 , HORVU6Hr1G002390.10 , HORVU6Hr1G002390.11 , HORVU6Hr1G002390.12
Wheat TraesCS3D02G404600 , TraesCS6B02G018700 , TraesCS3D02G381600 , TraesCS3B02G421200 , TraesCS6A02G012500 , TraesCS3D02G381800 , TraesCS3B02G421000 , TraesCS6D02G015100 , TraesCS3A02G387700 , TraesCS3A02G387600
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G050032 - -
2 Sobic.006G170000 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
3 Sobic.002G369301 - -
4 Sobic.009G123733 - -
5 Sobic.001G232500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
6 Sobic.004G092800 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
7 Sobic.003G370600 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
8 Sobic.003G082100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
9 Sobic.003G082200 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
10 Sobic.001G187400 cytochrome P450, putative, expressed -
11 Sobic.003G207900 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
12 Sobic.001G279701 - -
13 Sobic.003G346901 - -
14 Sobic.001G440200 senescence-associated protein, putative, expressed -
15 Sobic.007G039600 aquaporin protein, putative, expressed K09874: aquaporin NIP
16 Sobic.006G198700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.001G206600 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
18 Sobic.004G352000 cytochrome P450, putative, expressed -
19 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
20 Sobic.008G102900 expressed protein -


Gene co-expression network
sample Sobic003G376300 Sobic003G376300 Sobic005G050032 Sobic005G050032 Sobic003G376300--Sobic005G050032 Sobic006G170000 Sobic006G170000 Sobic003G376300--Sobic006G170000 Sobic002G369301 Sobic002G369301 Sobic003G376300--Sobic002G369301 Sobic009G123733 Sobic009G123733 Sobic003G376300--Sobic009G123733 Sobic001G232500 Sobic001G232500 Sobic003G376300--Sobic001G232500 Sobic004G092800 Sobic004G092800 Sobic003G376300--Sobic004G092800 Sobic003G370600 Sobic003G370600 Sobic003G376300--Sobic003G370600 Sobic003G082100 Sobic003G082100 Sobic003G376300--Sobic003G082100 Sobic003G082200 Sobic003G082200 Sobic003G376300--Sobic003G082200 Sobic005G050032--Sobic004G092800 Sobic005G050032--Sobic003G376300 Sobic005G050032--Sobic009G123733 Sobic005G050032--Sobic001G232500 Sobic003G207900 Sobic003G207900 Sobic005G050032--Sobic003G207900 Sobic005G050032--Sobic006G170000 Sobic005G050032--Sobic002G369301 Sobic001G187400 Sobic001G187400 Sobic005G050032--Sobic001G187400 Sobic002G090100 Sobic002G090100 Sobic005G050032--Sobic002G090100 Sobic006G170000--Sobic003G370600 Sobic004G352000 Sobic004G352000 Sobic006G170000--Sobic004G352000 Sobic001G256700 Sobic001G256700 Sobic006G170000--Sobic001G256700 Sobic004G004500 Sobic004G004500 Sobic006G170000--Sobic004G004500 Sobic008G187001 Sobic008G187001 Sobic006G170000--Sobic008G187001 Sobic004G246600 Sobic004G246600 Sobic006G170000--Sobic004G246600 Sobic006G170000--Sobic004G092800 Sobic002G388900 Sobic002G388900 Sobic006G170000--Sobic002G388900 Sobic009G194400 Sobic009G194400 Sobic006G170000--Sobic009G194400 Sobic002G369301--Sobic001G187400 Sobic002G369301--Sobic004G092800 Sobic002G369301--Sobic003G370600 Sobic002G369301--Sobic006G170000 Sobic002G369301--Sobic001G232500 Sobic001G279701 Sobic001G279701 Sobic002G369301--Sobic001G279701 Sobic001G187500 Sobic001G187500 Sobic002G369301--Sobic001G187500 Sobic001G425500 Sobic001G425500 Sobic002G369301--Sobic001G425500 Sobic002G369301--Sobic004G352000 Sobic009G123733--Sobic004G092800 Sobic004G251800 Sobic004G251800 Sobic009G123733--Sobic004G251800 Sobic009G123733--Sobic001G187400 Sobic009G123733--Sobic005G050032 Sobic004G263100 Sobic004G263100 Sobic009G123733--Sobic004G263100 Sobic002G388800 Sobic002G388800 Sobic009G123733--Sobic002G388800 Sobic005G013400 Sobic005G013400 Sobic009G123733--Sobic005G013400 Sobic002G390000 Sobic002G390000 Sobic009G123733--Sobic002G390000 Sobic008G079500 Sobic008G079500 Sobic009G123733--Sobic008G079500 Sobic001G232500--Sobic004G092800 Sobic008G102900 Sobic008G102900 Sobic001G232500--Sobic008G102900 Sobic001G232500--Sobic001G425500 Sobic001G425600 Sobic001G425600 Sobic001G232500--Sobic001G425600 Sobic001G232500--Sobic002G369301 Sobic001G232500--Sobic001G187400 Sobic001G232500--Sobic003G370600 Sobic001G232500--Sobic002G388800 Sobic003G112400 Sobic003G112400 Sobic001G232500--Sobic003G112400 Sobic004G092800--Sobic001G232500 Sobic001G065900 Sobic001G065900 Sobic004G092800--Sobic001G065900 Sobic004G092800--Sobic003G370600 Sobic004G092800--Sobic002G388800 Sobic004G092800--Sobic001G425500 Sobic004G092800--Sobic004G263100 Sobic004G092800--Sobic009G194400 Sobic004G092800--Sobic002G369301 Sobic004G092800--Sobic006G170000 Sobic003G370600--Sobic006G170000 Sobic003G370600--Sobic004G352000 Sobic003G370600--Sobic009G194400 Sobic003G370600--Sobic001G256700 Sobic003G370600--Sobic004G092800 Sobic003G370600--Sobic004G246600 Sobic009G144700 Sobic009G144700 Sobic003G370600--Sobic009G144700 Sobic003G370600--Sobic004G004500 Sobic003G370600--Sobic002G388900 Sobic003G082100--Sobic003G082200 Sobic008G170100 Sobic008G170100 Sobic003G082100--Sobic008G170100 Sobic001G365100 Sobic001G365100 Sobic003G082100--Sobic001G365100 Sobic008G060050 Sobic008G060050 Sobic003G082100--Sobic008G060050 Sobic010G044400 Sobic010G044400 Sobic003G082100--Sobic010G044400 Sobic003G082100--Sobic002G369301 Sobic003G317100 Sobic003G317100 Sobic003G082100--Sobic003G317100 Sobic004G229800 Sobic004G229800 Sobic003G082100--Sobic004G229800 Sobic007G039600 Sobic007G039600 Sobic003G082100--Sobic007G039600 Sobic003G082200--Sobic003G082100 Sobic003G082200--Sobic001G365100 Sobic003G082200--Sobic008G170100 Sobic003G082200--Sobic004G229800 Sobic003G082200--Sobic007G039600 Sobic009G139700 Sobic009G139700 Sobic003G082200--Sobic009G139700 Sobic010G084600 Sobic010G084600 Sobic003G082200--Sobic010G084600 Sobic003G082200--Sobic003G317100 Sobic007G057000 Sobic007G057000 Sobic003G082200--Sobic007G057000
Octagon: transcription factors


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