Gene annotation
| Transcriptome id | Sobic.003G082100.1 |
|---|---|
| Synonym | Sb03g006890, HSP18.2, |
| Functional annotation | Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) hsp20/alpha crystallin family protein, putative, expressed |
| UniProt | C5XQS1 |
| Pfam | PF00011 |
| Panther DB | PTHR11527 PTHR11527:SF152 |
| NCBI CDD | KOG0710; Molecular chaperone (small heat-shock protein Hsp26/Hsp42) |
| KEGG Orthology | K13993; HSP20 family protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G59720 : heat shock protein 18.2 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g04360.1 : hsp20/alpha crystallin family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023564 , Zm00025a023567 , Zm00025a023554 , Zm00025a023555 , Zm00025a023557 , Zm00025a001758 , Zm00025a001756 , Zm00025a035577 , Zm00025a001753 |
| Brachypodium | KQK04325 , KQK02573 , KQK02572 , KQK22411 , KQK20327 |
| Barley | HORVU2Hr1G120170.1 , HORVU3Hr1G007380.1 , HORVU3Hr1G006530.1 , HORVU3Hr1G007500.1 , HORVU3Hr1G007500.2 , HORVU3Hr1G007500.4 |
| Wheat | TraesCS7D02G185500 , TraesCS7A02G183800 , TraesCS7B02G088700 , TraesCS7D02G185600 , TraesCS7B02G088600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G082200 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 2 | Sobic.008G170100 | phospholipase, putative, expressed | - |
| 3 | Sobic.001G365100 | lipase, putative, expressed | - |
| 4 | Sobic.008G060050 | - | - |
| 5 | Sobic.010G044400 | Up-reguralion under heat(PubMedID : 24916767)@GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 6 | Sobic.002G369301 | - | - |
| 7 | Sobic.003G317100 | expressed protein | - |
| 8 | Sobic.004G229800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed | - |
| 9 | Sobic.007G039600 | aquaporin protein, putative, expressed | K09874: aquaporin NIP |
| 10 | Sobic.002G368500 | B12D protein, putative, expressed | - |
| 11 | Sobic.009G139700 | - | - |
| 12 | Sobic.008G005000 | "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 13 | Sobic.003G376300 | 4,5-DOPA dioxygenase extradiol, putative, expressed | K15777: 4,5-DOPA dioxygenase extradiol |
| 14 | Sobic.001G279701 | - | - |
| 15 | Sobic.010G084600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
| 16 | Sobic.005G045900 | - | - |
| 17 | Sobic.010G085500 | VIP1 protein, putative, expressed | - |
| 18 | Sobic.007G155000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed | K01674: carbonic anhydrase |
| 19 | Sobic.006G234800 | expressed protein | - |
| 20 | Sobic.006G170000 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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