Gene annotation
| Transcriptome id | Sobic.002G368500.2 |
|---|---|
| Synonym | Sb02g038760 |
| Functional annotation | B12D protein, putative, expressed |
| UniProt | A0A1W0W773 |
| Pfam | PF06522 |
| Panther DB | PTHR33417 PTHR33417:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G29970 : B12D protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g41340.1 : B12D protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048699 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 2 | Sobic.005G011200 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 3 | Sobic.003G317100 | expressed protein | - |
| 4 | Sobic.005G051500 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 5 | Sobic.006G099900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed | - |
| 6 | Sobic.010G052700 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 7 | Sobic.006G084600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed | - |
| 8 | Sobic.003G252800 | hypothetical protein | - |
| 9 | Sobic.001G365100 | lipase, putative, expressed | - |
| 10 | Sobic.005G045900 | - | - |
| 11 | Sobic.008G060050 | - | - |
| 12 | Sobic.003G286600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed | K04713: sphinganine C4-monooxygenase |
| 13 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 14 | Sobic.003G088500 | multicopper oxidase domain containing protein, expressed | - |
| 15 | Sobic.003G437200 | sulfotransferase domain containing protein, expressed | - |
| 16 | Sobic.001G333400 | SCP-like extracellular protein, expressed | - |
| 17 | Sobic.010G044400 | Up-reguralion under heat(PubMedID : 24916767)@GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 18 | Sobic.010G259500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed | - |
| 19 | Sobic.001G348700 | - | - |
| 20 | Sobic.002G183200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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