Gene annotation
Transcriptome id Sobic.008G005000.1
Synonym PCK1, lateral organ boundaries, ASL5, LBD12, SbLBD26, Sb08g000575, SbLBD26;lateral organ boundaries
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root" (PubMedID : 20499123)
SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
DUF260 domain containing protein, putative, expressed
UniProt A0A1B6PAP6
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30130 : Lateral organ boundaries (LOB) domain family protein
RAP-DB (Rice) LOC_Os05g27980.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007545 , Zm00025a053791
Brachypodium -
Barley HORVU5Hr1G047610.2 , HORVU5Hr1G047610.1
Wheat TraesCS1B02G235700 , TraesCS1D02G224000 , TraesCS1A02G222300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
2 Sobic.007G039600 aquaporin protein, putative, expressed K09874: aquaporin NIP
3 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.006G234800 expressed protein -
5 Sobic.003G317100 expressed protein -
6 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
7 Sobic.001G365100 lipase, putative, expressed -
8 Sobic.010G259500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
9 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
10 Sobic.002G354100 transporter family protein, putative, expressed -
11 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
12 Sobic.005G051500 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.001G018300 cytochrome P450 71E1, putative, expressed -
14 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
15 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
16 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
17 Sobic.002G368500 B12D protein, putative, expressed -
18 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
19 Sobic.005G045900 - -
20 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic008G005000 Sobic008G005000 Sobic004G229800 Sobic004G229800 Sobic008G005000--Sobic004G229800 Sobic007G039600 Sobic007G039600 Sobic008G005000--Sobic007G039600 Sobic001G435000 Sobic001G435000 Sobic008G005000--Sobic001G435000 Sobic006G234800 Sobic006G234800 Sobic008G005000--Sobic006G234800 Sobic003G317100 Sobic003G317100 Sobic008G005000--Sobic003G317100 Sobic003G286600 Sobic003G286600 Sobic008G005000--Sobic003G286600 Sobic001G365100 Sobic001G365100 Sobic008G005000--Sobic001G365100 Sobic010G259500 Sobic010G259500 Sobic008G005000--Sobic010G259500 Sobic002G336600 Sobic002G336600 Sobic008G005000--Sobic002G336600 Sobic004G229800--Sobic001G435000 Sobic007G036900 Sobic007G036900 Sobic004G229800--Sobic007G036900 Sobic001G018300 Sobic001G018300 Sobic004G229800--Sobic001G018300 Sobic004G229800--Sobic002G336600 Sobic004G141200 Sobic004G141200 Sobic004G229800--Sobic004G141200 Sobic002G188900 Sobic002G188900 Sobic004G229800--Sobic002G188900 Sobic004G208700 Sobic004G208700 Sobic004G229800--Sobic004G208700 Sobic004G004500 Sobic004G004500 Sobic004G229800--Sobic004G004500 Sobic002G140400 Sobic002G140400 Sobic004G229800--Sobic002G140400 Sobic007G039600--Sobic010G259500 Sobic007G039600--Sobic001G365100 Sobic007G030400 Sobic007G030400 Sobic007G039600--Sobic007G030400 Sobic007G039600--Sobic004G229800 Sobic003G307801 Sobic003G307801 Sobic007G039600--Sobic003G307801 Sobic008G158666 Sobic008G158666 Sobic007G039600--Sobic008G158666 Sobic005G051500 Sobic005G051500 Sobic007G039600--Sobic005G051500 Sobic007G039600--Sobic001G018300 Sobic003G265000 Sobic003G265000 Sobic007G039600--Sobic003G265000 Sobic001G435000--Sobic004G208700 Sobic001G435000--Sobic004G229800 Sobic009G159400 Sobic009G159400 Sobic001G435000--Sobic009G159400 Sobic007G155000 Sobic007G155000 Sobic001G435000--Sobic007G155000 Sobic003G345100 Sobic003G345100 Sobic001G435000--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic001G435000--Sobic005G063100 Sobic005G099000 Sobic005G099000 Sobic001G435000--Sobic005G099000 Sobic008G050600 Sobic008G050600 Sobic001G435000--Sobic008G050600 Sobic001G140900 Sobic001G140900 Sobic001G435000--Sobic001G140900 Sobic006G234800--Sobic001G435000 Sobic001G231700 Sobic001G231700 Sobic006G234800--Sobic001G231700 Sobic006G234800--Sobic004G229800 Sobic001G304100 Sobic001G304100 Sobic006G234800--Sobic001G304100 Sobic006G132900 Sobic006G132900 Sobic006G234800--Sobic006G132900 Sobic001G402200 Sobic001G402200 Sobic006G234800--Sobic001G402200 Sobic001G367600 Sobic001G367600 Sobic006G234800--Sobic001G367600 Sobic007G017500 Sobic007G017500 Sobic006G234800--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic006G234800--Sobic006G075400 Sobic003G317100--Sobic003G286600 Sobic006G099900 Sobic006G099900 Sobic003G317100--Sobic006G099900 Sobic006G084600 Sobic006G084600 Sobic003G317100--Sobic006G084600 Sobic004G221500 Sobic004G221500 Sobic003G317100--Sobic004G221500 Sobic003G352300 Sobic003G352300 Sobic003G317100--Sobic003G352300 Sobic005G045900 Sobic005G045900 Sobic003G317100--Sobic005G045900 Sobic003G317100--Sobic001G435000 Sobic010G044400 Sobic010G044400 Sobic003G317100--Sobic010G044400 Sobic003G317100--Sobic004G229800 Sobic010G176600 Sobic010G176600 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic003G286600--Sobic005G063100 Sobic003G286600--Sobic006G099900 Sobic003G286600--Sobic004G208700 Sobic003G286600--Sobic002G140400 Sobic003G286600--Sobic003G345100 Sobic003G286600--Sobic003G317100 Sobic009G164600 Sobic009G164600 Sobic003G286600--Sobic009G164600 Sobic001G365100--Sobic010G259500 Sobic007G155100 Sobic007G155100 Sobic001G365100--Sobic007G155100 Sobic001G365100--Sobic004G229800 Sobic001G365100--Sobic007G039600 Sobic001G365100--Sobic006G084600 Sobic007G057000 Sobic007G057000 Sobic001G365100--Sobic007G057000 Sobic001G365100--Sobic003G317100 Sobic003G437200 Sobic003G437200 Sobic001G365100--Sobic003G437200 Sobic010G066700 Sobic010G066700 Sobic001G365100--Sobic010G066700 Sobic010G259500--Sobic001G365100 Sobic010G259500--Sobic001G402200 Sobic010G259500--Sobic007G039600 Sobic003G364000 Sobic003G364000 Sobic010G259500--Sobic003G364000 Sobic010G259500--Sobic007G155100 Sobic010G259500--Sobic003G307801 Sobic010G259500--Sobic010G066700 Sobic010G088700 Sobic010G088700 Sobic010G259500--Sobic010G088700 Sobic010G259500--Sobic005G051500 Sobic004G237800 Sobic004G237800 Sobic002G336600--Sobic004G237800 Sobic007G074000 Sobic007G074000 Sobic002G336600--Sobic007G074000 Sobic002G336600--Sobic004G208700 Sobic002G336600--Sobic004G229800 Sobic003G369100 Sobic003G369100 Sobic002G336600--Sobic003G369100 Sobic002G336600--Sobic001G435000 Sobic002G336600--Sobic002G140400 Sobic002G336600--Sobic004G141200 Sobic002G336600--Sobic003G345100
Octagon: transcription factors


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