Gene annotation
Transcriptome id Sobic.009G260200.1
Synonym Sb09g030930, SPCH
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A1B6PAN7
Pfam PF00010
Panther DB PTHR11514 PTHR11514:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06120 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os05g51820.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a022171 , Zm00025a033131 , Zm00025a036828
Brachypodium KQK14752 , KQK01808
Barley HORVU2Hr1G020990.1 , HORVU2Hr1G020990.4 , HORVU2Hr1G020990.2 , HORVU2Hr1G020990.3
Wheat TraesCS2D02G122800 , TraesCS2A02G120700 , TraesCS2B02G141600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G042600 expressed protein -
2 Sobic.006G201600 transcription factor FL, putative, expressed -
3 Sobic.007G189400 BEE 1, putative, expressed -
4 Sobic.005G188500 expressed protein -
5 Sobic.005G123900 ATP binding protein, putative, expressed K17592: sacsin
6 Sobic.001G119200 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
8 Sobic.007G142900 receptor-like kinase, putative, expressed -
9 Sobic.006G189400 expressed protein -
10 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
11 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
12 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.004G168600 heat shock protein-related, putative, expressed -
14 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
15 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -
16 Sobic.009G189900 expressed protein -
17 Sobic.001G075700 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
18 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
19 Sobic.009G254500 protein kinase, putative, expressed -
20 Sobic.002G011000 expressed protein -


Gene co-expression network
sample Sobic009G260200 Sobic009G260200 Sobic001G042600 Sobic001G042600 Sobic009G260200--Sobic001G042600 Sobic006G201600 Sobic006G201600 Sobic009G260200--Sobic006G201600 Sobic007G189400 Sobic007G189400 Sobic009G260200--Sobic007G189400 Sobic005G188500 Sobic005G188500 Sobic009G260200--Sobic005G188500 Sobic005G123900 Sobic005G123900 Sobic009G260200--Sobic005G123900 Sobic001G119200 Sobic001G119200 Sobic009G260200--Sobic001G119200 Sobic006G032800 Sobic006G032800 Sobic009G260200--Sobic006G032800 Sobic007G142900 Sobic007G142900 Sobic009G260200--Sobic007G142900 Sobic006G189400 Sobic006G189400 Sobic009G260200--Sobic006G189400 Sobic001G042600--Sobic009G260200 Sobic001G042600--Sobic007G189400 Sobic001G042600--Sobic001G119200 Sobic001G075700 Sobic001G075700 Sobic001G042600--Sobic001G075700 Sobic010G020600 Sobic010G020600 Sobic001G042600--Sobic010G020600 Sobic003G018700 Sobic003G018700 Sobic001G042600--Sobic003G018700 Sobic001G042600--Sobic007G142900 Sobic001G042600--Sobic005G188500 Sobic009G254500 Sobic009G254500 Sobic001G042600--Sobic009G254500 Sobic006G201600--Sobic009G260200 Sobic006G201600--Sobic007G142900 Sobic004G144100 Sobic004G144100 Sobic006G201600--Sobic004G144100 Sobic006G201600--Sobic001G042600 Sobic009G200000 Sobic009G200000 Sobic006G201600--Sobic009G200000 Sobic009G259500 Sobic009G259500 Sobic006G201600--Sobic009G259500 Sobic006G201600--Sobic005G123900 Sobic006G201600--Sobic007G189400 Sobic005G204100 Sobic005G204100 Sobic006G201600--Sobic005G204100 Sobic002G072700 Sobic002G072700 Sobic007G189400--Sobic002G072700 Sobic007G189400--Sobic005G188500 Sobic007G189400--Sobic009G254500 Sobic003G339600 Sobic003G339600 Sobic007G189400--Sobic003G339600 Sobic001G488400 Sobic001G488400 Sobic007G189400--Sobic001G488400 Sobic007G189400--Sobic010G020600 Sobic006G044200 Sobic006G044200 Sobic007G189400--Sobic006G044200 Sobic007G189400--Sobic001G119200 Sobic002G139800 Sobic002G139800 Sobic007G189400--Sobic002G139800 Sobic005G188500--Sobic001G488400 Sobic005G188500--Sobic006G044200 Sobic005G188500--Sobic007G189400 Sobic005G188500--Sobic006G032800 Sobic007G012800 Sobic007G012800 Sobic005G188500--Sobic007G012800 Sobic008G035400 Sobic008G035400 Sobic005G188500--Sobic008G035400 Sobic010G065700 Sobic010G065700 Sobic005G188500--Sobic010G065700 Sobic005G209900 Sobic005G209900 Sobic005G188500--Sobic005G209900 Sobic010G107200 Sobic010G107200 Sobic005G188500--Sobic010G107200 Sobic005G123900--Sobic009G260200 Sobic005G148400 Sobic005G148400 Sobic005G123900--Sobic005G148400 Sobic010G161900 Sobic010G161900 Sobic005G123900--Sobic010G161900 Sobic005G123900--Sobic006G201600 Sobic008G066900 Sobic008G066900 Sobic005G123900--Sobic008G066900 Sobic007G187400 Sobic007G187400 Sobic005G123900--Sobic007G187400 Sobic005G123900--Sobic005G204100 Sobic003G156766 Sobic003G156766 Sobic005G123900--Sobic003G156766 Sobic006G099501 Sobic006G099501 Sobic005G123900--Sobic006G099501 Sobic002G011000 Sobic002G011000 Sobic001G119200--Sobic002G011000 Sobic001G119200--Sobic009G254500 Sobic010G077700 Sobic010G077700 Sobic001G119200--Sobic010G077700 Sobic006G160800 Sobic006G160800 Sobic001G119200--Sobic006G160800 Sobic004G302700 Sobic004G302700 Sobic001G119200--Sobic004G302700 Sobic009G141300 Sobic009G141300 Sobic001G119200--Sobic009G141300 Sobic001G046400 Sobic001G046400 Sobic001G119200--Sobic001G046400 Sobic004G342000 Sobic004G342000 Sobic001G119200--Sobic004G342000 Sobic001G438500 Sobic001G438500 Sobic001G119200--Sobic001G438500 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic006G032800--Sobic005G188500 Sobic006G233600 Sobic006G233600 Sobic006G032800--Sobic006G233600 Sobic006G032800--Sobic003G018700 Sobic009G154100 Sobic009G154100 Sobic006G032800--Sobic009G154100 Sobic001G389600 Sobic001G389600 Sobic006G032800--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic006G032800--Sobic001G478100 Sobic006G032800--Sobic007G012800 Sobic007G142900--Sobic002G072700 Sobic007G142900--Sobic005G204100 Sobic007G142900--Sobic009G259500 Sobic007G142900--Sobic007G189400 Sobic002G216600 Sobic002G216600 Sobic007G142900--Sobic002G216600 Sobic004G168600 Sobic004G168600 Sobic007G142900--Sobic004G168600 Sobic008G136100 Sobic008G136100 Sobic007G142900--Sobic008G136100 Sobic010G180800 Sobic010G180800 Sobic007G142900--Sobic010G180800 Sobic007G142900--Sobic006G201600 Sobic005G231400 Sobic005G231400 Sobic006G189400--Sobic005G231400 Sobic008G187400 Sobic008G187400 Sobic006G189400--Sobic008G187400 Sobic006G189400--Sobic001G488400 Sobic003G116100 Sobic003G116100 Sobic006G189400--Sobic003G116100 Sobic003G338200 Sobic003G338200 Sobic006G189400--Sobic003G338200 Sobic002G419200 Sobic002G419200 Sobic006G189400--Sobic002G419200 Sobic001G345200 Sobic001G345200 Sobic006G189400--Sobic001G345200 Sobic006G189400--Sobic007G012800 Sobic003G300400 Sobic003G300400 Sobic006G189400--Sobic003G300400
Octagon: transcription factors


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