Gene annotation
Transcriptome id Sobic.010G068001.1
Synonym -
Functional annotation -
UniProt A0A1W0VRT7
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF396
NCBI CDD KOG1371; UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
KEGG Orthology K08679; UDP-glucuronate 4-epimerase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT4G30440 : UDP-D-glucuronate 4-epimerase 1
RAP-DB (Rice) LOC_Os02g54890.1 : UDP-glucuronate 4-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a022434 , Zm00025a042419 , Zm00025a047551 , Zm00025a049735 , Zm00025a043603 , Zm00025a030385 , Zm00025a021747 , Zm00025a005229 , Zm00025a042686 , Zm00025a032956
Brachypodium KQK19214 , KQK01095 , KQJ99081 , KQJ90895
Barley HORVU7Hr1G031270.1 , HORVU5Hr1G075660.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G118600 sodium/potassium/calcium exchanger 1, putative, expressed -
2 Sobic.003G418900 expressed protein -
3 Sobic.004G345200 OsWAK11 - OsWAK receptor-like protein kinase, expressed -
4 Sobic.003G250340 - K07976: Rab family, other
5 Sobic.010G196200 OsSub51 - Putative Subtilisin homologue, expressed -
6 Sobic.009G187900 ethylene-responsive protein related, putative, expressed -
7 Sobic.005G116601 - -
8 Sobic.006G044466 - -
9 Sobic.005G038700 transcription factor, putative, expressed K14431: transcription factor TGA
10 Sobic.002G188200 RING-H2 finger protein, putative, expressed -
11 Sobic.001G087500 - -
12 Sobic.004G325832 - -
13 Sobic.002G152000 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.002G350800 lectin-like receptor kinase, putative, expressed -
15 Sobic.010G278400 coiled-coil domain-containing protein 12, putative, expressed K12871: coiled-coil domain-containing protein 12
16 Sobic.008G045300 citrate-binding protein precursor, putative, expressed -
17 Sobic.009G203600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Receptor-like protein kinase HSL1(PubMedID : 31721651)@receptor-like protein kinase 5 precursor, putative, expressed -
18 Sobic.003G130650 - -
19 Sobic.007G114650 - -
20 Sobic.004G328800 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic010G068001 Sobic010G068001 Sobic010G118600 Sobic010G118600 Sobic010G068001--Sobic010G118600 Sobic003G418900 Sobic003G418900 Sobic010G068001--Sobic003G418900 Sobic004G345200 Sobic004G345200 Sobic010G068001--Sobic004G345200 Sobic003G250340 Sobic003G250340 Sobic010G068001--Sobic003G250340 Sobic010G196200 Sobic010G196200 Sobic010G068001--Sobic010G196200 Sobic009G187900 Sobic009G187900 Sobic010G068001--Sobic009G187900 Sobic005G116601 Sobic005G116601 Sobic010G068001--Sobic005G116601 Sobic006G044466 Sobic006G044466 Sobic010G068001--Sobic006G044466 Sobic005G038700 Sobic005G038700 Sobic010G068001--Sobic005G038700 Sobic010G118600--Sobic005G116601 Sobic010G118600--Sobic003G250340 Sobic010G118600--Sobic010G196200 Sobic002G350800 Sobic002G350800 Sobic010G118600--Sobic002G350800 Sobic010G118600--Sobic005G038700 Sobic002G035100 Sobic002G035100 Sobic010G118600--Sobic002G035100 Sobic001G087500 Sobic001G087500 Sobic010G118600--Sobic001G087500 Sobic010G118600--Sobic010G068001 Sobic003G130650 Sobic003G130650 Sobic010G118600--Sobic003G130650 Sobic003G418900--Sobic010G068001 Sobic003G418900--Sobic004G345200 Sobic008G159800 Sobic008G159800 Sobic003G418900--Sobic008G159800 Sobic001G169000 Sobic001G169000 Sobic003G418900--Sobic001G169000 Sobic003G418900--Sobic003G130650 Sobic007G165100 Sobic007G165100 Sobic003G418900--Sobic007G165100 Sobic001G193700 Sobic001G193700 Sobic003G418900--Sobic001G193700 Sobic010G242000 Sobic010G242000 Sobic003G418900--Sobic010G242000 Sobic010G213100 Sobic010G213100 Sobic003G418900--Sobic010G213100 Sobic004G345200--Sobic002G035100 Sobic004G345200--Sobic010G118600 Sobic004G345200--Sobic010G068001 Sobic008G151900 Sobic008G151900 Sobic004G345200--Sobic008G151900 Sobic010G118401 Sobic010G118401 Sobic004G345200--Sobic010G118401 Sobic004G345200--Sobic003G418900 Sobic004G345200--Sobic005G116601 Sobic007G175600 Sobic007G175600 Sobic004G345200--Sobic007G175600 Sobic004G228000 Sobic004G228000 Sobic004G345200--Sobic004G228000 Sobic003G250340--Sobic010G196200 Sobic008G045300 Sobic008G045300 Sobic003G250340--Sobic008G045300 Sobic003G250340--Sobic005G038700 Sobic003G250340--Sobic003G130650 Sobic009G203600 Sobic009G203600 Sobic003G250340--Sobic009G203600 Sobic003G250340--Sobic010G118600 Sobic007G114650 Sobic007G114650 Sobic003G250340--Sobic007G114650 Sobic003G250340--Sobic009G187900 Sobic003G333150 Sobic003G333150 Sobic003G250340--Sobic003G333150 Sobic002G188200 Sobic002G188200 Sobic010G196200--Sobic002G188200 Sobic010G196200--Sobic003G250340 Sobic010G196200--Sobic008G045300 Sobic004G328800 Sobic004G328800 Sobic010G196200--Sobic004G328800 Sobic010G196200--Sobic006G044466 Sobic004G325832 Sobic004G325832 Sobic010G196200--Sobic004G325832 Sobic001G003300 Sobic001G003300 Sobic010G196200--Sobic001G003300 Sobic008G175933 Sobic008G175933 Sobic010G196200--Sobic008G175933 Sobic002G152000 Sobic002G152000 Sobic010G196200--Sobic002G152000 Sobic004G162600 Sobic004G162600 Sobic009G187900--Sobic004G162600 Sobic009G187900--Sobic003G250340 Sobic009G187900--Sobic001G087500 Sobic009G187900--Sobic005G038700 Sobic010G278400 Sobic010G278400 Sobic009G187900--Sobic010G278400 Sobic004G244500 Sobic004G244500 Sobic009G187900--Sobic004G244500 Sobic006G260101 Sobic006G260101 Sobic009G187900--Sobic006G260101 Sobic002G334900 Sobic002G334900 Sobic009G187900--Sobic002G334900 Sobic004G205400 Sobic004G205400 Sobic009G187900--Sobic004G205400 Sobic005G116601--Sobic010G118600 Sobic005G116601--Sobic004G205400 Sobic005G116601--Sobic001G087500 Sobic005G116601--Sobic003G250340 Sobic005G116601--Sobic004G162600 Sobic005G116601--Sobic003G130650 Sobic005G116601--Sobic010G196200 Sobic005G116601--Sobic002G035100 Sobic005G116601--Sobic005G038700 Sobic006G044466--Sobic002G188200 Sobic006G044466--Sobic004G325832 Sobic006G044466--Sobic010G196200 Sobic006G044466--Sobic001G003300 Sobic006G044466--Sobic008G175933 Sobic006G044466--Sobic004G328800 Sobic008G005700 Sobic008G005700 Sobic006G044466--Sobic008G005700 Sobic006G044466--Sobic002G152000 Sobic006G044466--Sobic008G045300 Sobic005G038700--Sobic003G250340 Sobic005G038700--Sobic010G196200 Sobic005G038700--Sobic010G118600 Sobic005G038700--Sobic009G187900 Sobic005G038700--Sobic008G045300 Sobic005G038700--Sobic007G165100 Sobic005G038700--Sobic003G130650 Sobic005G038700--Sobic009G203600 Sobic005G038700--Sobic001G087500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.