Gene annotation
Transcriptome id Sobic.003G250340.1
Synonym -
Functional annotation -
UniProt A0A1W0VYU6
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF499
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07976; Rab family, other
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G60860 : RAB GTPase homolog A1F
RAP-DB (Rice) LOC_Os01g47730.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a038760 , Zm00025a008978 , Zm00025a016417 , Zm00025a028122 , Zm00025a044575 , Zm00025a017900 , Zm00025a043281 , Zm00025a051086
Brachypodium KQK10571 , KQK10572 , KQK09101 , KQK04867 , KQJ98137 , KQK08122 , KQK12193 , KQK06841 , KQJ98073
Barley HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU5Hr1G080990.1 , HORVU5Hr1G080990.3 , HORVU5Hr1G080990.2 , HORVU7Hr1G063910.2 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS5D02G498600 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS5A02G184100 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS3D02G357500 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS3B02G277200 , TraesCS5D02G529500 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS1D02G013300 , TraesCS5A02G315700 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS5A02G485100 , TraesCS3D02G244500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G196200 OsSub51 - Putative Subtilisin homologue, expressed -
2 Sobic.008G045300 citrate-binding protein precursor, putative, expressed -
3 Sobic.005G038700 transcription factor, putative, expressed K14431: transcription factor TGA
4 Sobic.003G130650 - -
5 Sobic.009G203600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Receptor-like protein kinase HSL1(PubMedID : 31721651)@receptor-like protein kinase 5 precursor, putative, expressed -
6 Sobic.010G118600 sodium/potassium/calcium exchanger 1, putative, expressed -
7 Sobic.007G114650 - -
8 Sobic.009G187900 ethylene-responsive protein related, putative, expressed -
9 Sobic.003G333150 - -
10 Sobic.002G188200 RING-H2 finger protein, putative, expressed -
11 Sobic.002G334900 S-domain receptor-like protein kinase, putative, expressed -
12 Sobic.004G162600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
13 Sobic.002G152000 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.004G328800 transferase family protein, putative, expressed -
15 Sobic.001G086100 - -
16 Sobic.003G243750 - -
17 Sobic.004G293600 OsFBX15 - F-box domain containing protein, expressed -
18 Sobic.005G116601 - -
19 Sobic.001G169000 expressed protein -
20 Sobic.010G068001 - K08679: UDP-glucuronate 4-epimerase


Gene co-expression network
sample Sobic003G250340 Sobic003G250340 Sobic010G196200 Sobic010G196200 Sobic003G250340--Sobic010G196200 Sobic008G045300 Sobic008G045300 Sobic003G250340--Sobic008G045300 Sobic005G038700 Sobic005G038700 Sobic003G250340--Sobic005G038700 Sobic003G130650 Sobic003G130650 Sobic003G250340--Sobic003G130650 Sobic009G203600 Sobic009G203600 Sobic003G250340--Sobic009G203600 Sobic010G118600 Sobic010G118600 Sobic003G250340--Sobic010G118600 Sobic007G114650 Sobic007G114650 Sobic003G250340--Sobic007G114650 Sobic009G187900 Sobic009G187900 Sobic003G250340--Sobic009G187900 Sobic003G333150 Sobic003G333150 Sobic003G250340--Sobic003G333150 Sobic002G188200 Sobic002G188200 Sobic010G196200--Sobic002G188200 Sobic010G196200--Sobic003G250340 Sobic010G196200--Sobic008G045300 Sobic004G328800 Sobic004G328800 Sobic010G196200--Sobic004G328800 Sobic006G044466 Sobic006G044466 Sobic010G196200--Sobic006G044466 Sobic004G325832 Sobic004G325832 Sobic010G196200--Sobic004G325832 Sobic001G003300 Sobic001G003300 Sobic010G196200--Sobic001G003300 Sobic008G175933 Sobic008G175933 Sobic010G196200--Sobic008G175933 Sobic002G152000 Sobic002G152000 Sobic010G196200--Sobic002G152000 Sobic008G045300--Sobic003G333150 Sobic008G045300--Sobic002G188200 Sobic004G293600 Sobic004G293600 Sobic008G045300--Sobic004G293600 Sobic008G045300--Sobic009G203600 Sobic008G045300--Sobic010G196200 Sobic008G045300--Sobic004G328800 Sobic008G045300--Sobic008G175933 Sobic002G345100 Sobic002G345100 Sobic008G045300--Sobic002G345100 Sobic006G144900 Sobic006G144900 Sobic008G045300--Sobic006G144900 Sobic005G038700--Sobic003G250340 Sobic005G038700--Sobic010G196200 Sobic005G038700--Sobic010G118600 Sobic005G038700--Sobic009G187900 Sobic005G038700--Sobic008G045300 Sobic007G165100 Sobic007G165100 Sobic005G038700--Sobic007G165100 Sobic005G038700--Sobic003G130650 Sobic005G038700--Sobic009G203600 Sobic001G087500 Sobic001G087500 Sobic005G038700--Sobic001G087500 Sobic003G130650--Sobic003G250340 Sobic003G130650--Sobic008G045300 Sobic003G243750 Sobic003G243750 Sobic003G130650--Sobic003G243750 Sobic003G130650--Sobic007G165100 Sobic003G130650--Sobic002G152000 Sobic003G130650--Sobic007G114650 Sobic003G130650--Sobic005G038700 Sobic003G130650--Sobic003G333150 Sobic003G130650--Sobic009G203600 Sobic009G203600--Sobic006G144900 Sobic009G203600--Sobic008G045300 Sobic009G203600--Sobic003G333150 Sobic009G203600--Sobic002G345100 Sobic009G203600--Sobic004G293600 Sobic002G076200 Sobic002G076200 Sobic009G203600--Sobic002G076200 Sobic009G203600--Sobic003G243750 Sobic001G336600 Sobic001G336600 Sobic009G203600--Sobic001G336600 Sobic009G203600--Sobic003G250340 Sobic005G116601 Sobic005G116601 Sobic010G118600--Sobic005G116601 Sobic010G118600--Sobic003G250340 Sobic010G118600--Sobic010G196200 Sobic002G350800 Sobic002G350800 Sobic010G118600--Sobic002G350800 Sobic010G118600--Sobic005G038700 Sobic002G035100 Sobic002G035100 Sobic010G118600--Sobic002G035100 Sobic010G118600--Sobic001G087500 Sobic010G068001 Sobic010G068001 Sobic010G118600--Sobic010G068001 Sobic010G118600--Sobic003G130650 Sobic010G278400 Sobic010G278400 Sobic007G114650--Sobic010G278400 Sobic010G242000 Sobic010G242000 Sobic007G114650--Sobic010G242000 Sobic008G134500 Sobic008G134500 Sobic007G114650--Sobic008G134500 Sobic009G181900 Sobic009G181900 Sobic007G114650--Sobic009G181900 Sobic005G025400 Sobic005G025400 Sobic007G114650--Sobic005G025400 Sobic007G114650--Sobic003G250340 Sobic003G440500 Sobic003G440500 Sobic007G114650--Sobic003G440500 Sobic007G114650--Sobic003G130650 Sobic007G114650--Sobic001G087500 Sobic004G162600 Sobic004G162600 Sobic009G187900--Sobic004G162600 Sobic009G187900--Sobic003G250340 Sobic009G187900--Sobic001G087500 Sobic009G187900--Sobic005G038700 Sobic009G187900--Sobic010G278400 Sobic004G244500 Sobic004G244500 Sobic009G187900--Sobic004G244500 Sobic006G260101 Sobic006G260101 Sobic009G187900--Sobic006G260101 Sobic002G334900 Sobic002G334900 Sobic009G187900--Sobic002G334900 Sobic004G205400 Sobic004G205400 Sobic009G187900--Sobic004G205400 Sobic005G061300 Sobic005G061300 Sobic003G333150--Sobic005G061300 Sobic003G333150--Sobic006G144900 Sobic003G333150--Sobic008G045300 Sobic003G333150--Sobic002G345100 Sobic005G114000 Sobic005G114000 Sobic003G333150--Sobic005G114000 Sobic003G002800 Sobic003G002800 Sobic003G333150--Sobic003G002800 Sobic003G333150--Sobic004G293600 Sobic010G025200 Sobic010G025200 Sobic003G333150--Sobic010G025200 Sobic003G333150--Sobic009G203600
Octagon: transcription factors


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