Gene annotation
Transcriptome id Sobic.005G038700.2,Sobic.005G038700.1
Synonym Sb05g003240, bZIP21, TGA9
Functional annotation transcription factor, putative, expressed
UniProt A0A1Z5RH82 , A0A1Z5RGK1
Pfam PF00170 PF14144
Panther DB PTHR22952 PTHR22952:SF179
NCBI CDD -
KEGG Orthology K14431; transcription factor TGA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G08320 : bZIP transcription factor family protein
RAP-DB (Rice) LOC_Os11g05480.1 : transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a033493 , Zm00025a013014 , Zm00025a053894
Brachypodium KQJ89602 , KQJ89601 , PNT64257 , PNT64258
Barley HORVU4Hr1G025130.30 , HORVU4Hr1G025130.24 , HORVU4Hr1G025130.25 , HORVU4Hr1G025130.22 , HORVU4Hr1G025130.7 , HORVU4Hr1G025130.5 , HORVU4Hr1G025130.2 , HORVU4Hr1G025130.18 , HORVU4Hr1G025130.16 , HORVU4Hr1G025130.14 , HORVU4Hr1G025130.13 , HORVU4Hr1G025130.10
Wheat TraesCS4B02G135000 , TraesCS4D02G129900 , TraesCS4A02G183400 , TraesCS4A02G183400 , TraesCS4A02G183400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G038700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G250340 - K07976: Rab family, other
2 Sobic.010G196200 OsSub51 - Putative Subtilisin homologue, expressed -
3 Sobic.010G118600 sodium/potassium/calcium exchanger 1, putative, expressed -
4 Sobic.009G187900 ethylene-responsive protein related, putative, expressed -
5 Sobic.008G045300 citrate-binding protein precursor, putative, expressed -
6 Sobic.007G165100 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
7 Sobic.003G130650 - -
8 Sobic.009G203600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Receptor-like protein kinase HSL1(PubMedID : 31721651)@receptor-like protein kinase 5 precursor, putative, expressed -
9 Sobic.001G087500 - -
10 Sobic.007G114650 - -
11 Sobic.002G152000 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.002G350800 lectin-like receptor kinase, putative, expressed -
13 Sobic.005G116601 - -
14 Sobic.002G188200 RING-H2 finger protein, putative, expressed -
15 Sobic.004G244500 dynamin, putative, expressed K01528: dynamin 1/3
16 Sobic.003G243750 - -
17 Sobic.004G162600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
18 Sobic.010G068001 - K08679: UDP-glucuronate 4-epimerase
19 Sobic.003G333150 - -
20 Sobic.004G325832 - -


Gene co-expression network
sample Sobic005G038700 Sobic005G038700 Sobic003G250340 Sobic003G250340 Sobic005G038700--Sobic003G250340 Sobic010G196200 Sobic010G196200 Sobic005G038700--Sobic010G196200 Sobic010G118600 Sobic010G118600 Sobic005G038700--Sobic010G118600 Sobic009G187900 Sobic009G187900 Sobic005G038700--Sobic009G187900 Sobic008G045300 Sobic008G045300 Sobic005G038700--Sobic008G045300 Sobic007G165100 Sobic007G165100 Sobic005G038700--Sobic007G165100 Sobic003G130650 Sobic003G130650 Sobic005G038700--Sobic003G130650 Sobic009G203600 Sobic009G203600 Sobic005G038700--Sobic009G203600 Sobic001G087500 Sobic001G087500 Sobic005G038700--Sobic001G087500 Sobic003G250340--Sobic010G196200 Sobic003G250340--Sobic008G045300 Sobic003G250340--Sobic005G038700 Sobic003G250340--Sobic003G130650 Sobic003G250340--Sobic009G203600 Sobic003G250340--Sobic010G118600 Sobic007G114650 Sobic007G114650 Sobic003G250340--Sobic007G114650 Sobic003G250340--Sobic009G187900 Sobic003G333150 Sobic003G333150 Sobic003G250340--Sobic003G333150 Sobic002G188200 Sobic002G188200 Sobic010G196200--Sobic002G188200 Sobic010G196200--Sobic003G250340 Sobic010G196200--Sobic008G045300 Sobic004G328800 Sobic004G328800 Sobic010G196200--Sobic004G328800 Sobic006G044466 Sobic006G044466 Sobic010G196200--Sobic006G044466 Sobic004G325832 Sobic004G325832 Sobic010G196200--Sobic004G325832 Sobic001G003300 Sobic001G003300 Sobic010G196200--Sobic001G003300 Sobic008G175933 Sobic008G175933 Sobic010G196200--Sobic008G175933 Sobic002G152000 Sobic002G152000 Sobic010G196200--Sobic002G152000 Sobic005G116601 Sobic005G116601 Sobic010G118600--Sobic005G116601 Sobic010G118600--Sobic003G250340 Sobic010G118600--Sobic010G196200 Sobic002G350800 Sobic002G350800 Sobic010G118600--Sobic002G350800 Sobic010G118600--Sobic005G038700 Sobic002G035100 Sobic002G035100 Sobic010G118600--Sobic002G035100 Sobic010G118600--Sobic001G087500 Sobic010G068001 Sobic010G068001 Sobic010G118600--Sobic010G068001 Sobic010G118600--Sobic003G130650 Sobic004G162600 Sobic004G162600 Sobic009G187900--Sobic004G162600 Sobic009G187900--Sobic003G250340 Sobic009G187900--Sobic001G087500 Sobic009G187900--Sobic005G038700 Sobic010G278400 Sobic010G278400 Sobic009G187900--Sobic010G278400 Sobic004G244500 Sobic004G244500 Sobic009G187900--Sobic004G244500 Sobic006G260101 Sobic006G260101 Sobic009G187900--Sobic006G260101 Sobic002G334900 Sobic002G334900 Sobic009G187900--Sobic002G334900 Sobic004G205400 Sobic004G205400 Sobic009G187900--Sobic004G205400 Sobic008G045300--Sobic003G333150 Sobic008G045300--Sobic002G188200 Sobic004G293600 Sobic004G293600 Sobic008G045300--Sobic004G293600 Sobic008G045300--Sobic009G203600 Sobic008G045300--Sobic010G196200 Sobic008G045300--Sobic004G328800 Sobic008G045300--Sobic008G175933 Sobic002G345100 Sobic002G345100 Sobic008G045300--Sobic002G345100 Sobic006G144900 Sobic006G144900 Sobic008G045300--Sobic006G144900 Sobic007G165100--Sobic003G130650 Sobic007G185000 Sobic007G185000 Sobic007G165100--Sobic007G185000 Sobic001G082700 Sobic001G082700 Sobic007G165100--Sobic001G082700 Sobic007G165100--Sobic005G038700 Sobic008G159800 Sobic008G159800 Sobic007G165100--Sobic008G159800 Sobic003G243750 Sobic003G243750 Sobic007G165100--Sobic003G243750 Sobic002G377400 Sobic002G377400 Sobic007G165100--Sobic002G377400 Sobic007G165100--Sobic009G203600 Sobic003G091900 Sobic003G091900 Sobic007G165100--Sobic003G091900 Sobic003G130650--Sobic003G250340 Sobic003G130650--Sobic008G045300 Sobic003G130650--Sobic003G243750 Sobic003G130650--Sobic007G165100 Sobic003G130650--Sobic002G152000 Sobic003G130650--Sobic007G114650 Sobic003G130650--Sobic005G038700 Sobic003G130650--Sobic003G333150 Sobic003G130650--Sobic009G203600 Sobic009G203600--Sobic006G144900 Sobic009G203600--Sobic008G045300 Sobic009G203600--Sobic003G333150 Sobic009G203600--Sobic002G345100 Sobic009G203600--Sobic004G293600 Sobic002G076200 Sobic002G076200 Sobic009G203600--Sobic002G076200 Sobic009G203600--Sobic003G243750 Sobic001G336600 Sobic001G336600 Sobic009G203600--Sobic001G336600 Sobic009G203600--Sobic003G250340 Sobic001G087500--Sobic010G278400 Sobic001G087500--Sobic004G205400 Sobic001G087500--Sobic009G187900 Sobic001G087500--Sobic010G118600 Sobic001G087500--Sobic005G116601 Sobic001G087500--Sobic007G114650 Sobic010G060701 Sobic010G060701 Sobic001G087500--Sobic010G060701 Sobic009G181900 Sobic009G181900 Sobic001G087500--Sobic009G181900 Sobic010G118401 Sobic010G118401 Sobic001G087500--Sobic010G118401
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.