Gene annotation
Transcriptome id Sobic.010G086100.1
Synonym SKIP, Sb10g007460
Functional annotation SKIP/SNW domain containing protein, expressed
UniProt A0A1W0VRZ4
Pfam PF02731
Panther DB PTHR12096
NCBI CDD KOG2441; mRNA splicing factor/probable chromatin binding snw family nuclear protein
KEGG Orthology K06063; SNW1, SKIIP, SNW domain-containing protein 1
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G77180 : chromatin protein family
RAP-DB (Rice) LOC_Os06g11420.1 : SKIP/SNW domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G027901 - K10523: speckle-type POZ protein
2 Sobic.001G407300 expressed protein -
3 Sobic.006G230000 - -
4 Sobic.003G211000 - -
5 Sobic.010G261900 methyltransferase, putative, expressed -
6 Sobic.001G186700 expressed protein -
7 Sobic.004G048900 myosin heavy chain, putative, expressed -
8 Sobic.009G030001 - -
9 Sobic.004G281500 fringe-related protein, putative, expressed -
10 Sobic.004G168150 - -
11 Sobic.004G348000 white-brown complex homolog protein, putative, expressed -
12 Sobic.010G181701 - -
13 Sobic.009G176200 expressed protein -
14 Sobic.010G157900 - -
15 Sobic.005G199800 expressed protein K04730: interleukin-1 receptor-associated kinase 1
16 Sobic.003G406060 - -
17 Sobic.009G138401 - -
18 Sobic.004G060400 ANTH/ENTH domain containing protein, putative, expressed -
19 Sobic.003G066300 expressed protein -
20 Sobic.001G144150 - -


Gene co-expression network
sample Sobic010G086100 Sobic010G086100 Sobic002G027901 Sobic002G027901 Sobic010G086100--Sobic002G027901 Sobic001G407300 Sobic001G407300 Sobic010G086100--Sobic001G407300 Sobic006G230000 Sobic006G230000 Sobic010G086100--Sobic006G230000 Sobic003G211000 Sobic003G211000 Sobic010G086100--Sobic003G211000 Sobic010G261900 Sobic010G261900 Sobic010G086100--Sobic010G261900 Sobic001G186700 Sobic001G186700 Sobic010G086100--Sobic001G186700 Sobic004G048900 Sobic004G048900 Sobic010G086100--Sobic004G048900 Sobic009G030001 Sobic009G030001 Sobic010G086100--Sobic009G030001 Sobic004G281500 Sobic004G281500 Sobic010G086100--Sobic004G281500 Sobic010G074000 Sobic010G074000 Sobic002G027901--Sobic010G074000 Sobic005G161400 Sobic005G161400 Sobic002G027901--Sobic005G161400 Sobic006G232700 Sobic006G232700 Sobic002G027901--Sobic006G232700 Sobic003G254200 Sobic003G254200 Sobic002G027901--Sobic003G254200 Sobic009G246600 Sobic009G246600 Sobic002G027901--Sobic009G246600 Sobic002G027901--Sobic003G211000 Sobic010G030500 Sobic010G030500 Sobic002G027901--Sobic010G030500 Sobic005G199800 Sobic005G199800 Sobic002G027901--Sobic005G199800 Sobic003G394000 Sobic003G394000 Sobic002G027901--Sobic003G394000 Sobic001G407300--Sobic010G261900 Sobic010G279600 Sobic010G279600 Sobic001G407300--Sobic010G279600 Sobic004G289100 Sobic004G289100 Sobic001G407300--Sobic004G289100 Sobic001G407300--Sobic004G281500 Sobic009G044200 Sobic009G044200 Sobic001G407300--Sobic009G044200 Sobic001G152800 Sobic001G152800 Sobic001G407300--Sobic001G152800 Sobic004G008500 Sobic004G008500 Sobic001G407300--Sobic004G008500 Sobic005G067200 Sobic005G067200 Sobic001G407300--Sobic005G067200 Sobic001G407300--Sobic003G211000 Sobic002G106700 Sobic002G106700 Sobic006G230000--Sobic002G106700 Sobic008G091785 Sobic008G091785 Sobic006G230000--Sobic008G091785 Sobic007G007400 Sobic007G007400 Sobic006G230000--Sobic007G007400 Sobic008G164000 Sobic008G164000 Sobic006G230000--Sobic008G164000 Sobic005G191200 Sobic005G191200 Sobic006G230000--Sobic005G191200 Sobic003G406060 Sobic003G406060 Sobic006G230000--Sobic003G406060 Sobic001G135650 Sobic001G135650 Sobic006G230000--Sobic001G135650 SobicK028900 SobicK028900 Sobic006G230000--SobicK028900 Sobic003G078000 Sobic003G078000 Sobic006G230000--Sobic003G078000 Sobic009G176200 Sobic009G176200 Sobic003G211000--Sobic009G176200 Sobic003G211000--Sobic010G261900 Sobic010G187800 Sobic010G187800 Sobic003G211000--Sobic010G187800 Sobic001G513400 Sobic001G513400 Sobic003G211000--Sobic001G513400 Sobic003G061600 Sobic003G061600 Sobic003G211000--Sobic003G061600 Sobic004G185000 Sobic004G185000 Sobic003G211000--Sobic004G185000 Sobic002G029000 Sobic002G029000 Sobic003G211000--Sobic002G029000 Sobic002G405300 Sobic002G405300 Sobic003G211000--Sobic002G405300 Sobic009G249400 Sobic009G249400 Sobic003G211000--Sobic009G249400 Sobic010G261900--Sobic003G211000 Sobic010G261900--Sobic002G029000 Sobic010G063700 Sobic010G063700 Sobic010G261900--Sobic010G063700 Sobic007G166500 Sobic007G166500 Sobic010G261900--Sobic007G166500 Sobic010G261900--Sobic010G279600 Sobic010G261900--Sobic004G008500 Sobic003G434100 Sobic003G434100 Sobic010G261900--Sobic003G434100 Sobic004G123100 Sobic004G123100 Sobic010G261900--Sobic004G123100 Sobic007G146300 Sobic007G146300 Sobic010G261900--Sobic007G146300 Sobic001G144150 Sobic001G144150 Sobic001G186700--Sobic001G144150 Sobic003G145250 Sobic003G145250 Sobic001G186700--Sobic003G145250 Sobic001G186700--Sobic009G030001 Sobic001G186700--Sobic005G191200 Sobic001G186700--Sobic005G199800 Sobic003G075300 Sobic003G075300 Sobic001G186700--Sobic003G075300 Sobic003G191300 Sobic003G191300 Sobic001G186700--Sobic003G191300 Sobic010G012700 Sobic010G012700 Sobic001G186700--Sobic010G012700 Sobic005G041450 Sobic005G041450 Sobic001G186700--Sobic005G041450 Sobic004G048900--Sobic009G249400 Sobic004G048900--Sobic003G254200 Sobic004G048900--Sobic010G074000 Sobic004G031900 Sobic004G031900 Sobic004G048900--Sobic004G031900 Sobic004G048900--Sobic009G176200 Sobic009G072600 Sobic009G072600 Sobic004G048900--Sobic009G072600 Sobic003G208900 Sobic003G208900 Sobic004G048900--Sobic003G208900 Sobic010G157900 Sobic010G157900 Sobic004G048900--Sobic010G157900 Sobic005G192000 Sobic005G192000 Sobic004G048900--Sobic005G192000 Sobic009G030001--Sobic004G289100 Sobic009G030001--Sobic004G281500 Sobic009G030001--Sobic009G072600 Sobic009G030001--Sobic005G199800 Sobic009G030001--Sobic003G434100 Sobic009G030001--Sobic007G166500 Sobic009G030001--Sobic002G029000 Sobic002G323200 Sobic002G323200 Sobic009G030001--Sobic002G323200 Sobic009G030001--Sobic001G152800 Sobic004G281500--Sobic004G289100 Sobic004G281500--Sobic009G072600 Sobic004G281500--Sobic007G166500 Sobic004G281500--Sobic001G152800 Sobic004G281500--Sobic003G434100 Sobic004G281500--Sobic002G029000 Sobic004G281500--Sobic010G279600 Sobic004G281500--Sobic005G199800 Sobic004G281500--Sobic002G323200
Octagon: transcription factors


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