Gene annotation
Transcriptome id Sobic.001G097000.1
Synonym Sb01g008680
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5X1B1
Pfam PF00400
Panther DB PTHR22844 PTHR22844:SF128
NCBI CDD KOG0271; Notchless-like WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G26490 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g52870.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a008064 , Zm00025a004513 , Zm00025a016849 , Zm00025a025223 , Zm00025a007383
Brachypodium KQK13305 , KQK14131 , KQK18793
Barley HORVU5Hr1G093830.1
Wheat TraesCS7D02G196700 , TraesCS7A02G195200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G282000 cytochrome c, putative, expressed K08738: cytochrome c
2 Sobic.008G119501 - -
3 Sobic.002G066300 expressed protein -
4 Sobic.002G303500 actin-depolymerizing factor, putative, expressed K05765: cofilin
5 Sobic.005G023700 pollen allergen Cyn d 23, putative, expressed -
6 Sobic.004G242600 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.003G335200 monocopper oxidase, putative, expressed -
8 Sobic.009G091600 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.003G400000 signal peptide peptidase-like 2B, putative, expressed -
10 Sobic.008G053750 - -
11 Sobic.009G075400 RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
12 Sobic.008G027900 pollen allergen, putative, expressed -
13 Sobic.001G024800 uncharacterized Cys-rich domain containing protein, putative, expressed -
14 Sobic.010G006900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
15 Sobic.006G263500 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.006G159000 OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed -
17 Sobic.008G028000 pollen allergen, putative, expressed -
18 Sobic.005G025600 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed -
19 Sobic.004G029032 - -
20 Sobic.007G112400 polygalacturonase, putative, expressed -


Gene co-expression network
sample Sobic001G097000 Sobic001G097000 Sobic006G282000 Sobic006G282000 Sobic001G097000--Sobic006G282000 Sobic008G119501 Sobic008G119501 Sobic001G097000--Sobic008G119501 Sobic002G066300 Sobic002G066300 Sobic001G097000--Sobic002G066300 Sobic002G303500 Sobic002G303500 Sobic001G097000--Sobic002G303500 Sobic005G023700 Sobic005G023700 Sobic001G097000--Sobic005G023700 Sobic004G242600 Sobic004G242600 Sobic001G097000--Sobic004G242600 Sobic003G335200 Sobic003G335200 Sobic001G097000--Sobic003G335200 Sobic009G091600 Sobic009G091600 Sobic001G097000--Sobic009G091600 Sobic003G400000 Sobic003G400000 Sobic001G097000--Sobic003G400000 Sobic006G282000--Sobic008G119501 Sobic006G282000--Sobic001G097000 Sobic006G282000--Sobic002G066300 Sobic006G282000--Sobic002G303500 Sobic006G282000--Sobic004G242600 Sobic006G282000--Sobic005G023700 Sobic006G282000--Sobic009G091600 Sobic001G024800 Sobic001G024800 Sobic006G282000--Sobic001G024800 Sobic006G282000--Sobic003G400000 Sobic008G119501--Sobic006G282000 Sobic008G119501--Sobic002G066300 Sobic008G119501--Sobic001G097000 Sobic008G119501--Sobic001G024800 Sobic008G119501--Sobic004G242600 Sobic008G119501--Sobic002G303500 Sobic008G119501--Sobic003G400000 Sobic008G119501--Sobic005G023700 Sobic004G029032 Sobic004G029032 Sobic008G119501--Sobic004G029032 Sobic002G066300--Sobic005G023700 Sobic002G066300--Sobic008G119501 Sobic002G066300--Sobic006G282000 Sobic002G066300--Sobic009G091600 Sobic002G066300--Sobic003G400000 Sobic010G006900 Sobic010G006900 Sobic002G066300--Sobic010G006900 Sobic008G027900 Sobic008G027900 Sobic002G066300--Sobic008G027900 Sobic002G066300--Sobic001G097000 Sobic006G263500 Sobic006G263500 Sobic002G066300--Sobic006G263500 Sobic002G303500--Sobic006G282000 Sobic002G303500--Sobic008G119501 Sobic002G303500--Sobic001G097000 Sobic002G303500--Sobic002G066300 Sobic002G303500--Sobic004G242600 Sobic002G303500--Sobic001G024800 Sobic002G303500--Sobic005G023700 Sobic002G303500--Sobic003G400000 Sobic002G303500--Sobic009G091600 Sobic005G023700--Sobic010G006900 Sobic005G023700--Sobic006G263500 Sobic005G023700--Sobic008G027900 Sobic005G025600 Sobic005G025600 Sobic005G023700--Sobic005G025600 Sobic005G023700--Sobic002G066300 Sobic006G159000 Sobic006G159000 Sobic005G023700--Sobic006G159000 Sobic008G028000 Sobic008G028000 Sobic005G023700--Sobic008G028000 Sobic005G023700--Sobic003G335200 Sobic005G023700--Sobic009G091600 Sobic004G242600--Sobic008G119501 Sobic004G242600--Sobic006G282000 Sobic004G242600--Sobic002G066300 Sobic004G242600--Sobic002G303500 Sobic004G242600--Sobic001G097000 Sobic004G242600--Sobic009G091600 Sobic004G242600--Sobic005G023700 Sobic004G242600--Sobic008G027900 Sobic004G242600--Sobic003G400000 Sobic009G075400 Sobic009G075400 Sobic003G335200--Sobic009G075400 Sobic004G002800 Sobic004G002800 Sobic003G335200--Sobic004G002800 Sobic003G335200--Sobic005G023700 Sobic003G335200--Sobic005G025600 Sobic003G335200--Sobic006G263500 Sobic003G335200--Sobic006G159000 Sobic003G335200--Sobic002G066300 Sobic003G335200--Sobic010G006900 Sobic001G252900 Sobic001G252900 Sobic003G335200--Sobic001G252900 Sobic009G091600--Sobic008G027900 Sobic009G091600--Sobic004G029032 Sobic009G091600--Sobic005G023700 Sobic009G091600--Sobic003G400000 Sobic009G091600--Sobic010G006900 Sobic009G091600--Sobic008G028000 Sobic009G091600--Sobic006G263500 Sobic009G091600--Sobic002G066300 Sobic007G112400 Sobic007G112400 Sobic009G091600--Sobic007G112400 Sobic003G400000--Sobic004G029032 Sobic003G400000--Sobic009G091600 Sobic003G400000--Sobic008G027900 Sobic003G400000--Sobic005G023700 Sobic003G400000--Sobic002G066300 Sobic003G400000--Sobic001G024800 Sobic003G400000--Sobic006G263500 Sobic003G400000--Sobic010G006900 Sobic006G171500 Sobic006G171500 Sobic003G400000--Sobic006G171500
Octagon: transcription factors


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