Gene annotation
Transcriptome id Sobic.001G105400.5,Sobic.001G105400.6,Sobic.001G105400.7,Sobic.001G105400.4
Synonym Sb01g009420
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5S549 , C5WM09
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF710
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49730 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g51840.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a007987
Brachypodium KQK13412
Barley HORVU4Hr1G009900.1 , HORVU4Hr1G009900.2 , HORVU4Hr1G009900.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.005G182300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.004G149150 - -
4 Sobic.010G244400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.008G108100 - -
6 Sobic.008G083700 RING-H2 finger protein, putative, expressed -
7 Sobic.001G141333 - -
8 Sobic.003G221650 - -
9 Sobic.004G271350 - -
10 Sobic.003G440200 expressed protein -
11 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
12 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
13 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
14 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
15 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
16 Sobic.003G389150 - -
17 Sobic.003G226900 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
18 Sobic.003G267150 - -
19 Sobic.004G262550 - -
20 Sobic.006G135200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G105400 Sobic001G105400 Sobic003G109000 Sobic003G109000 Sobic001G105400--Sobic003G109000 Sobic005G182300 Sobic005G182300 Sobic001G105400--Sobic005G182300 Sobic004G149150 Sobic004G149150 Sobic001G105400--Sobic004G149150 Sobic010G244400 Sobic010G244400 Sobic001G105400--Sobic010G244400 Sobic008G108100 Sobic008G108100 Sobic001G105400--Sobic008G108100 Sobic008G083700 Sobic008G083700 Sobic001G105400--Sobic008G083700 Sobic001G141333 Sobic001G141333 Sobic001G105400--Sobic001G141333 Sobic003G221650 Sobic003G221650 Sobic001G105400--Sobic003G221650 Sobic004G271350 Sobic004G271350 Sobic001G105400--Sobic004G271350 Sobic005G165300 Sobic005G165300 Sobic003G109000--Sobic005G165300 Sobic001G334800 Sobic001G334800 Sobic003G109000--Sobic001G334800 Sobic003G357900 Sobic003G357900 Sobic003G109000--Sobic003G357900 Sobic010G003800 Sobic010G003800 Sobic003G109000--Sobic010G003800 Sobic005G216833 Sobic005G216833 Sobic003G109000--Sobic005G216833 Sobic002G018800 Sobic002G018800 Sobic003G109000--Sobic002G018800 Sobic009G045400 Sobic009G045400 Sobic003G109000--Sobic009G045400 Sobic007G132300 Sobic007G132300 Sobic003G109000--Sobic007G132300 Sobic003G261766 Sobic003G261766 Sobic003G109000--Sobic003G261766 Sobic005G182300--Sobic003G109000 Sobic005G182300--Sobic010G244400 Sobic003G327300 Sobic003G327300 Sobic005G182300--Sobic003G327300 Sobic005G182300--Sobic003G357900 Sobic005G182300--Sobic001G105400 Sobic009G170050 Sobic009G170050 Sobic005G182300--Sobic009G170050 Sobic004G255400 Sobic004G255400 Sobic005G182300--Sobic004G255400 Sobic001G217850 Sobic001G217850 Sobic005G182300--Sobic001G217850 Sobic006G174050 Sobic006G174050 Sobic005G182300--Sobic006G174050 Sobic002G160500 Sobic002G160500 Sobic004G149150--Sobic002G160500 Sobic003G267150 Sobic003G267150 Sobic004G149150--Sobic003G267150 Sobic004G262550 Sobic004G262550 Sobic004G149150--Sobic004G262550 Sobic009G091940 Sobic009G091940 Sobic004G149150--Sobic009G091940 Sobic003G389150 Sobic003G389150 Sobic004G149150--Sobic003G389150 Sobic010G244400--Sobic004G255400 Sobic003G096750 Sobic003G096750 Sobic010G244400--Sobic003G096750 Sobic006G193801 Sobic006G193801 Sobic010G244400--Sobic006G193801 Sobic008G040201 Sobic008G040201 Sobic010G244400--Sobic008G040201 Sobic001G163500 Sobic001G163500 Sobic010G244400--Sobic001G163500 Sobic004G103450 Sobic004G103450 Sobic010G244400--Sobic004G103450 Sobic004G007133 Sobic004G007133 Sobic010G244400--Sobic004G007133 Sobic001G291701 Sobic001G291701 Sobic010G244400--Sobic001G291701 Sobic003G282400 Sobic003G282400 Sobic010G244400--Sobic003G282400 Sobic008G108100--Sobic003G267150 Sobic009G115800 Sobic009G115800 Sobic008G108100--Sobic009G115800 Sobic008G108100--Sobic002G160500 Sobic004G313000 Sobic004G313000 Sobic008G108100--Sobic004G313000 Sobic008G108100--Sobic004G262550 Sobic002G181400 Sobic002G181400 Sobic008G083700--Sobic002G181400 Sobic006G260000 Sobic006G260000 Sobic008G083700--Sobic006G260000 Sobic008G083700--Sobic003G109000 Sobic002G176500 Sobic002G176500 Sobic008G083700--Sobic002G176500 Sobic001G377900 Sobic001G377900 Sobic008G083700--Sobic001G377900 Sobic004G046001 Sobic004G046001 Sobic008G083700--Sobic004G046001 Sobic008G083700--Sobic001G105400 Sobic005G005000 Sobic005G005000 Sobic008G083700--Sobic005G005000 Sobic004G175000 Sobic004G175000 Sobic008G083700--Sobic004G175000 Sobic007G014500 Sobic007G014500 Sobic001G141333--Sobic007G014500 Sobic001G141333--Sobic002G160500 Sobic001G141333--Sobic004G262550 Sobic001G141333--Sobic003G267150 Sobic001G141333--Sobic003G389150 Sobic001G237250 Sobic001G237250 Sobic003G221650--Sobic001G237250 Sobic006G135550 Sobic006G135550 Sobic003G221650--Sobic006G135550 Sobic003G221650--Sobic004G149150 Sobic006G099400 Sobic006G099400 Sobic003G221650--Sobic006G099400 Sobic003G221650--Sobic003G389150 Sobic003G226900 Sobic003G226900 Sobic003G221650--Sobic003G226900 Sobic003G221650--Sobic008G108100 Sobic003G221650--Sobic004G262550 Sobic003G221650--Sobic002G160500 Sobic004G271350--Sobic003G389150 Sobic004G271350--Sobic002G160500 Sobic004G271350--Sobic003G267150 Sobic004G271350--Sobic004G262550 Sobic004G271350--Sobic009G091940
Octagon: transcription factors


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