Gene annotation
Transcriptome id Sobic.008G083700.1
Synonym Sb08g008340
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5YU04
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF133
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G48030 : hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os02g50930.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G181400 WD domain, G-beta repeat domain containing protein, expressed K13175: THO complex subunit 6
2 Sobic.006G260000 expressed protein -
3 Sobic.003G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.002G176500 receptor-like protein kinase 2, putative, expressed -
5 Sobic.001G377900 OsFBX9 - F-box domain containing protein, expressed -
6 Sobic.004G046001 - -
7 Sobic.001G105400 PPR repeat containing protein, expressed -
8 Sobic.005G005000 cysteine-rich receptor-like protein kinase 4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
9 Sobic.004G175000 expressed protein -
10 Sobic.003G301400 DNA-directed polymerase, putative, expressed K03509: DNA polymerase eta
11 Sobic.002G430400 - -
12 Sobic.002G146200 arginyl-tRNA synthetase, putative, expressed -
13 Sobic.001G147800 - -
14 Sobic.002G037900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.010G117000 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
16 Sobic.001G069300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.010G069300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
18 Sobic.003G030500 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
19 Sobic.008G104350 - -
20 Sobic.010G177000 - -


Gene co-expression network
sample Sobic008G083700 Sobic008G083700 Sobic002G181400 Sobic002G181400 Sobic008G083700--Sobic002G181400 Sobic006G260000 Sobic006G260000 Sobic008G083700--Sobic006G260000 Sobic003G109000 Sobic003G109000 Sobic008G083700--Sobic003G109000 Sobic002G176500 Sobic002G176500 Sobic008G083700--Sobic002G176500 Sobic001G377900 Sobic001G377900 Sobic008G083700--Sobic001G377900 Sobic004G046001 Sobic004G046001 Sobic008G083700--Sobic004G046001 Sobic001G105400 Sobic001G105400 Sobic008G083700--Sobic001G105400 Sobic005G005000 Sobic005G005000 Sobic008G083700--Sobic005G005000 Sobic004G175000 Sobic004G175000 Sobic008G083700--Sobic004G175000 Sobic002G181400--Sobic008G083700 Sobic001G032550 Sobic001G032550 Sobic002G181400--Sobic001G032550 Sobic006G157400 Sobic006G157400 Sobic002G181400--Sobic006G157400 Sobic002G303200 Sobic002G303200 Sobic002G181400--Sobic002G303200 Sobic007G016400 Sobic007G016400 Sobic002G181400--Sobic007G016400 Sobic003G398500 Sobic003G398500 Sobic002G181400--Sobic003G398500 Sobic002G430400 Sobic002G430400 Sobic002G181400--Sobic002G430400 Sobic002G037900 Sobic002G037900 Sobic002G181400--Sobic002G037900 Sobic001G490700 Sobic001G490700 Sobic002G181400--Sobic001G490700 Sobic008G072400 Sobic008G072400 Sobic006G260000--Sobic008G072400 Sobic004G166600 Sobic004G166600 Sobic006G260000--Sobic004G166600 Sobic005G210400 Sobic005G210400 Sobic006G260000--Sobic005G210400 Sobic010G037701 Sobic010G037701 Sobic006G260000--Sobic010G037701 Sobic003G370800 Sobic003G370800 Sobic006G260000--Sobic003G370800 Sobic004G330800 Sobic004G330800 Sobic006G260000--Sobic004G330800 Sobic001G336450 Sobic001G336450 Sobic006G260000--Sobic001G336450 Sobic003G244850 Sobic003G244850 Sobic006G260000--Sobic003G244850 Sobic007G195900 Sobic007G195900 Sobic006G260000--Sobic007G195900 Sobic005G165300 Sobic005G165300 Sobic003G109000--Sobic005G165300 Sobic001G334800 Sobic001G334800 Sobic003G109000--Sobic001G334800 Sobic003G357900 Sobic003G357900 Sobic003G109000--Sobic003G357900 Sobic010G003800 Sobic010G003800 Sobic003G109000--Sobic010G003800 Sobic005G216833 Sobic005G216833 Sobic003G109000--Sobic005G216833 Sobic002G018800 Sobic002G018800 Sobic003G109000--Sobic002G018800 Sobic009G045400 Sobic009G045400 Sobic003G109000--Sobic009G045400 Sobic007G132300 Sobic007G132300 Sobic003G109000--Sobic007G132300 Sobic003G261766 Sobic003G261766 Sobic003G109000--Sobic003G261766 Sobic002G051000 Sobic002G051000 Sobic002G176500--Sobic002G051000 Sobic008G182500 Sobic008G182500 Sobic002G176500--Sobic008G182500 Sobic006G062400 Sobic006G062400 Sobic002G176500--Sobic006G062400 Sobic001G269300 Sobic001G269300 Sobic002G176500--Sobic001G269300 Sobic005G076000 Sobic005G076000 Sobic002G176500--Sobic005G076000 Sobic009G174866 Sobic009G174866 Sobic002G176500--Sobic009G174866 Sobic009G109101 Sobic009G109101 Sobic002G176500--Sobic009G109101 Sobic005G149000 Sobic005G149000 Sobic002G176500--Sobic005G149000 Sobic002G284600 Sobic002G284600 Sobic002G176500--Sobic002G284600 Sobic001G490800 Sobic001G490800 Sobic001G377900--Sobic001G490800 Sobic008G081100 Sobic008G081100 Sobic001G377900--Sobic008G081100 Sobic001G377900--Sobic003G109000 Sobic004G270100 Sobic004G270100 Sobic001G377900--Sobic004G270100 Sobic001G235600 Sobic001G235600 Sobic001G377900--Sobic001G235600 Sobic008G174200 Sobic008G174200 Sobic001G377900--Sobic008G174200 Sobic009G210800 Sobic009G210800 Sobic001G377900--Sobic009G210800 Sobic009G078300 Sobic009G078300 Sobic001G377900--Sobic009G078300 Sobic005G075700 Sobic005G075700 Sobic001G377900--Sobic005G075700 Sobic008G140000 Sobic008G140000 Sobic004G046001--Sobic008G140000 Sobic004G250100 Sobic004G250100 Sobic004G046001--Sobic004G250100 Sobic008G142766 Sobic008G142766 Sobic004G046001--Sobic008G142766 Sobic001G527600 Sobic001G527600 Sobic004G046001--Sobic001G527600 Sobic006G055100 Sobic006G055100 Sobic004G046001--Sobic006G055100 Sobic003G091850 Sobic003G091850 Sobic004G046001--Sobic003G091850 Sobic008G110900 Sobic008G110900 Sobic004G046001--Sobic008G110900 Sobic008G178300 Sobic008G178300 Sobic004G046001--Sobic008G178300 Sobic002G074300 Sobic002G074300 Sobic004G046001--Sobic002G074300 Sobic001G105400--Sobic003G109000 Sobic005G182300 Sobic005G182300 Sobic001G105400--Sobic005G182300 Sobic004G149150 Sobic004G149150 Sobic001G105400--Sobic004G149150 Sobic010G244400 Sobic010G244400 Sobic001G105400--Sobic010G244400 Sobic008G108100 Sobic008G108100 Sobic001G105400--Sobic008G108100 Sobic001G105400--Sobic008G083700 Sobic001G141333 Sobic001G141333 Sobic001G105400--Sobic001G141333 Sobic003G221650 Sobic003G221650 Sobic001G105400--Sobic003G221650 Sobic004G271350 Sobic004G271350 Sobic001G105400--Sobic004G271350 Sobic005G110523 Sobic005G110523 Sobic005G005000--Sobic005G110523 Sobic009G004700 Sobic009G004700 Sobic005G005000--Sobic009G004700 Sobic006G196000 Sobic006G196000 Sobic005G005000--Sobic006G196000 Sobic009G110366 Sobic009G110366 Sobic005G005000--Sobic009G110366 Sobic009G113600 Sobic009G113600 Sobic005G005000--Sobic009G113600 Sobic002G376900 Sobic002G376900 Sobic005G005000--Sobic002G376900 Sobic007G073400 Sobic007G073400 Sobic005G005000--Sobic007G073400 Sobic006G145000 Sobic006G145000 Sobic005G005000--Sobic006G145000 Sobic009G078500 Sobic009G078500 Sobic005G005000--Sobic009G078500 Sobic006G086900 Sobic006G086900 Sobic004G175000--Sobic006G086900 Sobic001G184800 Sobic001G184800 Sobic004G175000--Sobic001G184800 Sobic004G291800 Sobic004G291800 Sobic004G175000--Sobic004G291800 Sobic004G045566 Sobic004G045566 Sobic004G175000--Sobic004G045566 Sobic006G022500 Sobic006G022500 Sobic004G175000--Sobic006G022500 Sobic004G291700 Sobic004G291700 Sobic004G175000--Sobic004G291700 Sobic003G420201 Sobic003G420201 Sobic004G175000--Sobic003G420201 Sobic004G175000--Sobic008G083700 Sobic002G420300 Sobic002G420300 Sobic004G175000--Sobic002G420300
Octagon: transcription factors


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