Gene annotation
Transcriptome id Sobic.010G177000.4,Sobic.010G177000.2
Synonym
Functional annotation -
UniProt A0A194YJY7 , A0A194YKY6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G249100 expressed protein -
2 Sobic.009G250700 pentatricopeptide repeat protein PPR986-12, putative, expressed -
3 Sobic.008G093700 expressed protein -
4 Sobic.006G137300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
5 Sobic.001G425750 - -
6 Sobic.007G163800 is the major stem height gene(PubMedID : 20585750)@Candidate for recessive d2 dwarfing gene(PubMedID : 20464438)@"domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@"reduce the internode length, especially in the middle internodes IV-VII. decreased the cell proliferation rates"(PubMedID : 27329702)@"ATP-binding cassette type B (ABCB1), family of multidrug resistant (MDR), class of P-glycoproteins"(PubMedID : 29126242)@"auxin efflux carrier, PGP19"(PubMedID : 14526073)@Candidate gene for leaf angle (PubMedID : 26323882)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
7 Sobic.010G246700 glycosyl hydrolases family 16, putative, expressed K14504: xyloglucan:xyloglucosyl transferase TCH4
8 Sobic.003G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,4-alpha-glucan-branching enzyme, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
9 Sobic.001G321200 armadillo, putative, expressed -
10 Sobic.008G083700 RING-H2 finger protein, putative, expressed -
11 Sobic.003G262650 - -
12 Sobic.001G497100 expressed protein -
13 Sobic.008G123900 expressed protein -
14 Sobic.004G179900 Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
15 Sobic.007G037700 expressed protein -
16 Sobic.004G128666 - -
17 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.001G532900 PPR repeat domain containing protein, putative, expressed -
19 Sobic.003G365900 ATOFP18/OFP18, putative, expressed -
20 Sobic.009G035601 - -


Gene co-expression network
sample Sobic010G177000 Sobic010G177000 Sobic006G249100 Sobic006G249100 Sobic010G177000--Sobic006G249100 Sobic009G250700 Sobic009G250700 Sobic010G177000--Sobic009G250700 Sobic008G093700 Sobic008G093700 Sobic010G177000--Sobic008G093700 Sobic006G137300 Sobic006G137300 Sobic010G177000--Sobic006G137300 Sobic001G425750 Sobic001G425750 Sobic010G177000--Sobic001G425750 Sobic007G163800 Sobic007G163800 Sobic010G177000--Sobic007G163800 Sobic010G246700 Sobic010G246700 Sobic010G177000--Sobic010G246700 Sobic003G213800 Sobic003G213800 Sobic010G177000--Sobic003G213800 Sobic001G321200 Sobic001G321200 Sobic010G177000--Sobic001G321200 Sobic008G171100 Sobic008G171100 Sobic006G249100--Sobic008G171100 Sobic002G064400 Sobic002G064400 Sobic006G249100--Sobic002G064400 Sobic003G136400 Sobic003G136400 Sobic006G249100--Sobic003G136400 Sobic001G215300 Sobic001G215300 Sobic006G249100--Sobic001G215300 Sobic004G109000 Sobic004G109000 Sobic006G249100--Sobic004G109000 Sobic009G055900 Sobic009G055900 Sobic006G249100--Sobic009G055900 Sobic002G190100 Sobic002G190100 Sobic006G249100--Sobic002G190100 Sobic004G253800 Sobic004G253800 Sobic006G249100--Sobic004G253800 Sobic002G242600 Sobic002G242600 Sobic006G249100--Sobic002G242600 Sobic005G107400 Sobic005G107400 Sobic009G250700--Sobic005G107400 Sobic006G024800 Sobic006G024800 Sobic009G250700--Sobic006G024800 Sobic007G185400 Sobic007G185400 Sobic009G250700--Sobic007G185400 Sobic003G365900 Sobic003G365900 Sobic009G250700--Sobic003G365900 Sobic003G110866 Sobic003G110866 Sobic009G250700--Sobic003G110866 Sobic002G037300 Sobic002G037300 Sobic009G250700--Sobic002G037300 Sobic007G037700 Sobic007G037700 Sobic009G250700--Sobic007G037700 Sobic002G209500 Sobic002G209500 Sobic009G250700--Sobic002G209500 Sobic002G120850 Sobic002G120850 Sobic009G250700--Sobic002G120850 Sobic001G001700 Sobic001G001700 Sobic008G093700--Sobic001G001700 Sobic008G093700--Sobic006G137300 Sobic010G081300 Sobic010G081300 Sobic008G093700--Sobic010G081300 Sobic002G294300 Sobic002G294300 Sobic008G093700--Sobic002G294300 Sobic001G088400 Sobic001G088400 Sobic008G093700--Sobic001G088400 Sobic008G114101 Sobic008G114101 Sobic008G093700--Sobic008G114101 Sobic007G011500 Sobic007G011500 Sobic008G093700--Sobic007G011500 Sobic002G152300 Sobic002G152300 Sobic008G093700--Sobic002G152300 Sobic005G041800 Sobic005G041800 Sobic008G093700--Sobic005G041800 Sobic006G137300--Sobic001G001700 Sobic010G078400 Sobic010G078400 Sobic006G137300--Sobic010G078400 Sobic006G137300--Sobic008G093700 Sobic006G137300--Sobic001G088400 Sobic002G181800 Sobic002G181800 Sobic006G137300--Sobic002G181800 Sobic001G088000 Sobic001G088000 Sobic006G137300--Sobic001G088000 Sobic002G038500 Sobic002G038500 Sobic006G137300--Sobic002G038500 Sobic005G163600 Sobic005G163600 Sobic006G137300--Sobic005G163600 Sobic005G164900 Sobic005G164900 Sobic006G137300--Sobic005G164900 Sobic001G425750--Sobic001G321200 Sobic009G211800 Sobic009G211800 Sobic001G425750--Sobic009G211800 Sobic002G314800 Sobic002G314800 Sobic001G425750--Sobic002G314800 Sobic007G107950 Sobic007G107950 Sobic001G425750--Sobic007G107950 Sobic002G045200 Sobic002G045200 Sobic001G425750--Sobic002G045200 Sobic010G228100 Sobic010G228100 Sobic001G425750--Sobic010G228100 Sobic006G274866 Sobic006G274866 Sobic001G425750--Sobic006G274866 Sobic008G093600 Sobic008G093600 Sobic001G425750--Sobic008G093600 Sobic009G185900 Sobic009G185900 Sobic001G425750--Sobic009G185900 Sobic008G149650 Sobic008G149650 Sobic007G163800--Sobic008G149650 Sobic001G385500 Sobic001G385500 Sobic007G163800--Sobic001G385500 Sobic003G262650 Sobic003G262650 Sobic007G163800--Sobic003G262650 Sobic008G189000 Sobic008G189000 Sobic007G163800--Sobic008G189000 Sobic008G076900 Sobic008G076900 Sobic007G163800--Sobic008G076900 Sobic004G128666 Sobic004G128666 Sobic007G163800--Sobic004G128666 Sobic009G154100 Sobic009G154100 Sobic007G163800--Sobic009G154100 Sobic008G109100 Sobic008G109100 Sobic007G163800--Sobic008G109100 Sobic008G023401 Sobic008G023401 Sobic007G163800--Sobic008G023401 Sobic010G246700--Sobic009G055900 Sobic010G246700--Sobic008G171100 Sobic006G219200 Sobic006G219200 Sobic010G246700--Sobic006G219200 Sobic001G370000 Sobic001G370000 Sobic010G246700--Sobic001G370000 Sobic002G201100 Sobic002G201100 Sobic010G246700--Sobic002G201100 Sobic002G142500 Sobic002G142500 Sobic010G246700--Sobic002G142500 Sobic010G246700--Sobic006G249100 Sobic010G037600 Sobic010G037600 Sobic010G246700--Sobic010G037600 Sobic009G216300 Sobic009G216300 Sobic010G246700--Sobic009G216300 Sobic003G345300 Sobic003G345300 Sobic003G213800--Sobic003G345300 Sobic004G250100 Sobic004G250100 Sobic003G213800--Sobic004G250100 Sobic001G527600 Sobic001G527600 Sobic003G213800--Sobic001G527600 Sobic001G284200 Sobic001G284200 Sobic003G213800--Sobic001G284200 Sobic001G437801 Sobic001G437801 Sobic003G213800--Sobic001G437801 Sobic001G228300 Sobic001G228300 Sobic003G213800--Sobic001G228300 Sobic008G153200 Sobic008G153200 Sobic003G213800--Sobic008G153200 Sobic003G214800 Sobic003G214800 Sobic003G213800--Sobic003G214800 Sobic005G142900 Sobic005G142900 Sobic003G213800--Sobic005G142900 Sobic001G286400 Sobic001G286400 Sobic001G321200--Sobic001G286400 Sobic001G321200--Sobic002G045200 Sobic009G235700 Sobic009G235700 Sobic001G321200--Sobic009G235700 Sobic008G110400 Sobic008G110400 Sobic001G321200--Sobic008G110400 Sobic001G321200--Sobic008G093600 Sobic002G403000 Sobic002G403000 Sobic001G321200--Sobic002G403000 Sobic009G128800 Sobic009G128800 Sobic001G321200--Sobic009G128800 Sobic001G389600 Sobic001G389600 Sobic001G321200--Sobic001G389600 Sobic002G229700 Sobic002G229700 Sobic001G321200--Sobic002G229700
Octagon: transcription factors


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