Gene annotation
Transcriptome id Sobic.001G532900.1
Synonym Sb01g049600
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6QR16
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF425
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53170 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g02430.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000216
Brachypodium KQK24011
Barley HORVU4Hr1G086600.18 , HORVU4Hr1G086600.19 , HORVU4Hr1G086600.14 , HORVU4Hr1G086600.15 , HORVU4Hr1G086600.16 , HORVU4Hr1G086600.17 , HORVU4Hr1G086600.10 , HORVU4Hr1G086600.11 , HORVU4Hr1G086600.12 , HORVU4Hr1G086600.13 , HORVU4Hr1G086600.21 , HORVU4Hr1G086600.20 , HORVU4Hr1G086600.6 , HORVU4Hr1G086600.7 , HORVU4Hr1G086600.4 , HORVU4Hr1G086600.5 , HORVU4Hr1G086600.2 , HORVU4Hr1G086600.3 , HORVU4Hr1G086600.1 , HORVU4Hr1G086600.8 , HORVU4Hr1G086600.9
Wheat TraesCS5A02G528400 , TraesCS4B02G359900 , TraesCS4B02G359900 , TraesCS5A02G528400 , TraesCS4D02G353200 , TraesCS4D02G353200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G253800 - -
2 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
3 Sobic.003G383500 rhodanese-like, putative, expressed -
4 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
5 Sobic.002G221600 expressed protein -
6 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
7 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
8 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
9 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
10 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
11 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.002G013700 PPR2, putative, expressed -
13 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
15 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
16 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
17 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
19 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
20 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G532900 Sobic001G532900 Sobic004G253800 Sobic004G253800 Sobic001G532900--Sobic004G253800 Sobic007G013400 Sobic007G013400 Sobic001G532900--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic001G532900--Sobic003G383500 Sobic006G263800 Sobic006G263800 Sobic001G532900--Sobic006G263800 Sobic002G221600 Sobic002G221600 Sobic001G532900--Sobic002G221600 Sobic004G109000 Sobic004G109000 Sobic001G532900--Sobic004G109000 Sobic009G001500 Sobic009G001500 Sobic001G532900--Sobic009G001500 Sobic010G011200 Sobic010G011200 Sobic001G532900--Sobic010G011200 Sobic004G044000 Sobic004G044000 Sobic001G532900--Sobic004G044000 Sobic005G200600 Sobic005G200600 Sobic004G253800--Sobic005G200600 Sobic003G157500 Sobic003G157500 Sobic004G253800--Sobic003G157500 Sobic005G020200 Sobic005G020200 Sobic004G253800--Sobic005G020200 Sobic001G188600 Sobic001G188600 Sobic004G253800--Sobic001G188600 Sobic006G025700 Sobic006G025700 Sobic004G253800--Sobic006G025700 Sobic009G059100 Sobic009G059100 Sobic004G253800--Sobic009G059100 Sobic004G253800--Sobic009G001500 Sobic001G357200 Sobic001G357200 Sobic004G253800--Sobic001G357200 Sobic006G114300 Sobic006G114300 Sobic004G253800--Sobic006G114300 Sobic007G013400--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic003G383500--Sobic004G044000 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic003G383500--Sobic004G109000 Sobic007G116100 Sobic007G116100 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic002G140000 Sobic002G140000 Sobic006G263800--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic006G263800--Sobic001G281500 Sobic005G022800 Sobic005G022800 Sobic006G263800--Sobic005G022800 Sobic001G099000 Sobic001G099000 Sobic006G263800--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic006G263800--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic007G015300 Sobic007G015300 Sobic002G221600--Sobic007G015300 Sobic003G045300 Sobic003G045300 Sobic002G221600--Sobic003G045300 Sobic009G251000 Sobic009G251000 Sobic002G221600--Sobic009G251000 Sobic001G448600 Sobic001G448600 Sobic002G221600--Sobic001G448600 Sobic002G221600--Sobic001G099000 Sobic005G184300 Sobic005G184300 Sobic002G221600--Sobic005G184300 Sobic002G221600--Sobic006G237100 Sobic002G181132 Sobic002G181132 Sobic002G221600--Sobic002G181132 Sobic004G255500 Sobic004G255500 Sobic002G221600--Sobic004G255500 Sobic004G109000--Sobic001G188600 Sobic004G109000--Sobic007G211100 Sobic004G109000--Sobic006G114300 Sobic004G109000--Sobic003G383500 Sobic004G109000--Sobic009G059100 Sobic001G069500 Sobic001G069500 Sobic004G109000--Sobic001G069500 Sobic004G109000--Sobic006G025700 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic010G011200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic002G013700 Sobic002G013700 Sobic010G011200--Sobic002G013700 Sobic010G011200--Sobic009G001500 Sobic010G011200--Sobic001G383900 Sobic009G104700 Sobic009G104700 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic001G027600 Sobic001G027600 Sobic004G044000--Sobic001G027600 Sobic004G044000--Sobic001G383900 Sobic006G280050 Sobic006G280050 Sobic004G044000--Sobic006G280050 Sobic004G044000--Sobic009G001500 Sobic003G030900 Sobic003G030900 Sobic004G044000--Sobic003G030900 Sobic004G044000--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic004G044000--Sobic002G242600 Sobic001G076500 Sobic001G076500 Sobic004G044000--Sobic001G076500 Sobic007G034500 Sobic007G034500 Sobic004G044000--Sobic007G034500
Octagon: transcription factors


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