Gene annotation
Transcriptome id Sobic.007G163800.2,Sobic.007G163800.1
Synonym Dw3, ABCB1, Dw3;dwarf3, DW3;dwarf3, Sb07g023730, ATPGP1, PGP1, SbPGP21;Dw3;DWARF3, dw3;ABCB1;P-glycoprotein
Functional annotation is the major stem height gene (PubMedID : 20585750)
Candidate for recessive d2 dwarfing gene (PubMedID : 20464438)
"domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA treatment" (PubMedID : 20528920)
"reduce the internode length, especially in the middle internodes IV-VII. decreased the cell proliferation rates" (PubMedID : 27329702)
"ATP-binding cassette type B (ABCB1), family of multidrug resistant (MDR), class of P-glycoproteins" (PubMedID : 29126242)
"auxin efflux carrier, PGP19" (PubMedID : 14526073)
Candidate gene for leaf angle (PubMedID : 26323882)
multidrug resistance protein, putative, expressed
UniProt A0A1Z5RA79 , Q6UC91 , A0A1Z5RA91
Pfam PF00005 PF00664 PF00664 PF00005
Panther DB PTHR24221 PTHR24221:SF119
NCBI CDD KOG0055; Multidrug/pheromone exporter, ABC superfamily
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0016021integral component of membrane GO:0006810transport GO:0005524ATP binding GO:0016887ATPase activity


Orthologs (automatic annotation)
TAIR AT2G36910 : ATP binding cassette subfamily B1
RAP-DB (Rice) LOC_Os08g45030.1 : multidrug resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a028841 , Zm00025a005528
Brachypodium PNT78029 , PNT61308 , KQJ82960 , KQJ94695 , PNT61226
Barley HORVU7Hr1G063020.4 , HORVU7Hr1G063020.5 , HORVU7Hr1G063020.6 , HORVU7Hr1G063020.7 , HORVU7Hr1G063020.2 , HORVU7Hr1G063020.3 , HORVU7Hr1G063020.8 , HORVU7Hr1G063020.9 , HORVU7Hr1G063020.1 , HORVU4Hr1G077060.2 , HORVU4Hr1G077060.3 , HORVU4Hr1G077060.1 , HORVU4Hr1G077060.4
Wheat TraesCS7A02G284900 , TraesCS7A02G284900 , TraesCS7B02G181700 , TraesCS4B02G298100 , TraesCS2D02G523100 , TraesCS2D02G523100 , TraesCS2A02G521400 , TraesCS2A02G521400 , TraesCS2A02G521400 , TraesCS2B02G550700 , TraesCS6A02G264900 , TraesCS6A02G264900 , TraesCS6A02G264900 , TraesCS6A02G264900 , TraesCS4D02G296900 , TraesCS4D02G296900 , TraesCS2B02G341800 , TraesCS2B02G341800 , TraesCS3B02G136800 , TraesCS7D02G284100 , TraesCS6B02G291900 , TraesCS4A02G006900 , TraesCS3A02G117600 , TraesCS2A02G344300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G149650 - -
2 Sobic.001G385500 - -
3 Sobic.003G262650 - -
4 Sobic.008G189000 - -
5 Sobic.008G076900 expressed protein -
6 Sobic.004G128666 - -
7 Sobic.009G154100 expressed protein -
8 Sobic.008G109100 expressed protein -
9 Sobic.008G023401 - -
10 Sobic.001G356400 expansin precursor, putative, expressed -
11 Sobic.002G315000 - -
12 Sobic.007G037700 expressed protein -
13 Sobic.005G209900 expressed protein -
14 Sobic.001G142200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
15 Sobic.004G054200 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
16 Sobic.005G029700 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
17 Sobic.005G123900 ATP binding protein, putative, expressed K17592: sacsin
18 Sobic.003G110600 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.010G177000 - -
20 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -


Gene co-expression network
sample Sobic007G163800 Sobic007G163800 Sobic008G149650 Sobic008G149650 Sobic007G163800--Sobic008G149650 Sobic001G385500 Sobic001G385500 Sobic007G163800--Sobic001G385500 Sobic003G262650 Sobic003G262650 Sobic007G163800--Sobic003G262650 Sobic008G189000 Sobic008G189000 Sobic007G163800--Sobic008G189000 Sobic008G076900 Sobic008G076900 Sobic007G163800--Sobic008G076900 Sobic004G128666 Sobic004G128666 Sobic007G163800--Sobic004G128666 Sobic009G154100 Sobic009G154100 Sobic007G163800--Sobic009G154100 Sobic008G109100 Sobic008G109100 Sobic007G163800--Sobic008G109100 Sobic008G023401 Sobic008G023401 Sobic007G163800--Sobic008G023401 Sobic003G339600 Sobic003G339600 Sobic008G149650--Sobic003G339600 Sobic001G142200 Sobic001G142200 Sobic008G149650--Sobic001G142200 Sobic001G106200 Sobic001G106200 Sobic008G149650--Sobic001G106200 Sobic002G400600 Sobic002G400600 Sobic008G149650--Sobic002G400600 Sobic010G049300 Sobic010G049300 Sobic008G149650--Sobic010G049300 Sobic003G356600 Sobic003G356600 Sobic008G149650--Sobic003G356600 Sobic004G359500 Sobic004G359500 Sobic008G149650--Sobic004G359500 Sobic010G095800 Sobic010G095800 Sobic008G149650--Sobic010G095800 Sobic001G221900 Sobic001G221900 Sobic008G149650--Sobic001G221900 Sobic002G162000 Sobic002G162000 Sobic001G385500--Sobic002G162000 Sobic001G385500--Sobic010G049300 Sobic010G065800 Sobic010G065800 Sobic001G385500--Sobic010G065800 Sobic002G143200 Sobic002G143200 Sobic001G385500--Sobic002G143200 Sobic005G204100 Sobic005G204100 Sobic001G385500--Sobic005G204100 Sobic006G272500 Sobic006G272500 Sobic001G385500--Sobic006G272500 Sobic001G385400 Sobic001G385400 Sobic001G385500--Sobic001G385400 Sobic002G098500 Sobic002G098500 Sobic001G385500--Sobic002G098500 Sobic007G187400 Sobic007G187400 Sobic001G385500--Sobic007G187400 Sobic002G201100 Sobic002G201100 Sobic003G262650--Sobic002G201100 Sobic009G161100 Sobic009G161100 Sobic003G262650--Sobic009G161100 Sobic007G060900 Sobic007G060900 Sobic003G262650--Sobic007G060900 Sobic009G196200 Sobic009G196200 Sobic003G262650--Sobic009G196200 Sobic004G006100 Sobic004G006100 Sobic003G262650--Sobic004G006100 Sobic001G228300 Sobic001G228300 Sobic003G262650--Sobic001G228300 Sobic005G142900 Sobic005G142900 Sobic003G262650--Sobic005G142900 Sobic002G124100 Sobic002G124100 Sobic003G262650--Sobic002G124100 Sobic001G412200 Sobic001G412200 Sobic003G262650--Sobic001G412200 Sobic008G189000--Sobic009G196200 Sobic006G213200 Sobic006G213200 Sobic008G189000--Sobic006G213200 Sobic003G430000 Sobic003G430000 Sobic008G189000--Sobic003G430000 Sobic005G146300 Sobic005G146300 Sobic008G189000--Sobic005G146300 Sobic008G189000--Sobic002G201100 Sobic008G189000--Sobic005G142900 Sobic004G170600 Sobic004G170600 Sobic008G189000--Sobic004G170600 Sobic009G056400 Sobic009G056400 Sobic008G189000--Sobic009G056400 Sobic008G189000--Sobic003G262650 Sobic009G099700 Sobic009G099700 Sobic008G076900--Sobic009G099700 Sobic001G442800 Sobic001G442800 Sobic008G076900--Sobic001G442800 Sobic002G316000 Sobic002G316000 Sobic008G076900--Sobic002G316000 Sobic001G361800 Sobic001G361800 Sobic008G076900--Sobic001G361800 Sobic005G054700 Sobic005G054700 Sobic008G076900--Sobic005G054700 Sobic004G154600 Sobic004G154600 Sobic008G076900--Sobic004G154600 Sobic010G273400 Sobic010G273400 Sobic008G076900--Sobic010G273400 Sobic008G110900 Sobic008G110900 Sobic008G076900--Sobic008G110900 Sobic009G260000 Sobic009G260000 Sobic008G076900--Sobic009G260000 Sobic004G128666--Sobic001G412200 Sobic004G176500 Sobic004G176500 Sobic004G128666--Sobic004G176500 Sobic008G031200 Sobic008G031200 Sobic004G128666--Sobic008G031200 Sobic002G084400 Sobic002G084400 Sobic004G128666--Sobic002G084400 Sobic009G238700 Sobic009G238700 Sobic004G128666--Sobic009G238700 Sobic004G128666--Sobic002G162000 Sobic010G232700 Sobic010G232700 Sobic004G128666--Sobic010G232700 Sobic006G085900 Sobic006G085900 Sobic004G128666--Sobic006G085900 Sobic003G051500 Sobic003G051500 Sobic004G128666--Sobic003G051500 Sobic010G107200 Sobic010G107200 Sobic009G154100--Sobic010G107200 Sobic005G209900 Sobic005G209900 Sobic009G154100--Sobic005G209900 Sobic002G315000 Sobic002G315000 Sobic009G154100--Sobic002G315000 Sobic007G012800 Sobic007G012800 Sobic009G154100--Sobic007G012800 Sobic002G179700 Sobic002G179700 Sobic009G154100--Sobic002G179700 Sobic007G189400 Sobic007G189400 Sobic009G154100--Sobic007G189400 Sobic005G227050 Sobic005G227050 Sobic009G154100--Sobic005G227050 Sobic009G154100--Sobic001G221900 Sobic006G032800 Sobic006G032800 Sobic009G154100--Sobic006G032800 Sobic008G065800 Sobic008G065800 Sobic008G109100--Sobic008G065800 Sobic005G079700 Sobic005G079700 Sobic008G109100--Sobic005G079700 Sobic008G106600 Sobic008G106600 Sobic008G109100--Sobic008G106600 Sobic008G000800 Sobic008G000800 Sobic008G109100--Sobic008G000800 Sobic010G004400 Sobic010G004400 Sobic008G109100--Sobic010G004400 Sobic003G277900 Sobic003G277900 Sobic008G109100--Sobic003G277900 Sobic010G166700 Sobic010G166700 Sobic008G109100--Sobic010G166700 Sobic008G091671 Sobic008G091671 Sobic008G109100--Sobic008G091671 Sobic002G205900 Sobic002G205900 Sobic008G109100--Sobic002G205900 Sobic003G018700 Sobic003G018700 Sobic008G023401--Sobic003G018700 Sobic008G023401--Sobic009G154100 Sobic010G020600 Sobic010G020600 Sobic008G023401--Sobic010G020600 Sobic006G241800 Sobic006G241800 Sobic008G023401--Sobic006G241800 Sobic007G163400 Sobic007G163400 Sobic008G023401--Sobic007G163400 Sobic006G044200 Sobic006G044200 Sobic008G023401--Sobic006G044200 Sobic001G381100 Sobic001G381100 Sobic008G023401--Sobic001G381100 Sobic004G248100 Sobic004G248100 Sobic008G023401--Sobic004G248100 Sobic008G023401--Sobic007G189400
Octagon: transcription factors


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