Gene annotation
Transcriptome id Sobic.008G023401.1
Synonym -
Functional annotation -
UniProt A0A1B6PAZ3
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54220 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os11g03110.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013152 , Zm00025a051287 , Zm00025a033336
Brachypodium PNT65541
Barley HORVU5Hr1G045920.3 , HORVU5Hr1G045920.2 , HORVU5Hr1G045920.1 , HORVU5Hr1G045920.5 , HORVU5Hr1G045920.4 , HORVU4Hr1G024020.1 , HORVU4Hr1G024020.2 , HORVU4Hr1G024030.1 , HORVU4Hr1G024030.2 , HORVU0Hr1G003230.1 , HORVU0Hr1G003230.2
Wheat TraesCS5B02G143100 , TraesCS4A02G191300 , TraesCS4D02G122000 , TraesCS5D02G148000 , TraesCS4B02G124000 , TraesCS5A02G144000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
2 Sobic.009G154100 expressed protein -
3 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
4 Sobic.006G241800 receptor kinase, putative, expressed -
5 Sobic.007G163400 protein Kinase-like protein TMKL1 precursor, putative, expressed -
6 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.004G248100 endoglucanase, putative, expressed -
9 Sobic.007G189400 BEE 1, putative, expressed -
10 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
12 Sobic.002G419200 inactive receptor kinase At2g26730 precursor, putative, expressed -
13 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
14 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
15 Sobic.008G093600 expressed protein -
16 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
17 Sobic.009G172700 expressed protein -
18 Sobic.010G010900 expressed protein -
19 Sobic.007G142900 receptor-like kinase, putative, expressed -
20 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -


Gene co-expression network
sample Sobic008G023401 Sobic008G023401 Sobic003G018700 Sobic003G018700 Sobic008G023401--Sobic003G018700 Sobic009G154100 Sobic009G154100 Sobic008G023401--Sobic009G154100 Sobic010G020600 Sobic010G020600 Sobic008G023401--Sobic010G020600 Sobic006G241800 Sobic006G241800 Sobic008G023401--Sobic006G241800 Sobic007G163400 Sobic007G163400 Sobic008G023401--Sobic007G163400 Sobic006G044200 Sobic006G044200 Sobic008G023401--Sobic006G044200 Sobic001G381100 Sobic001G381100 Sobic008G023401--Sobic001G381100 Sobic004G248100 Sobic004G248100 Sobic008G023401--Sobic004G248100 Sobic007G189400 Sobic007G189400 Sobic008G023401--Sobic007G189400 Sobic003G018700--Sobic010G020600 Sobic003G018700--Sobic006G241800 Sobic003G018700--Sobic004G248100 Sobic002G164700 Sobic002G164700 Sobic003G018700--Sobic002G164700 Sobic003G018700--Sobic001G381100 Sobic004G317200 Sobic004G317200 Sobic003G018700--Sobic004G317200 Sobic006G032800 Sobic006G032800 Sobic003G018700--Sobic006G032800 Sobic003G018700--Sobic006G044200 Sobic001G074100 Sobic001G074100 Sobic003G018700--Sobic001G074100 Sobic010G107200 Sobic010G107200 Sobic009G154100--Sobic010G107200 Sobic005G209900 Sobic005G209900 Sobic009G154100--Sobic005G209900 Sobic002G315000 Sobic002G315000 Sobic009G154100--Sobic002G315000 Sobic007G012800 Sobic007G012800 Sobic009G154100--Sobic007G012800 Sobic002G179700 Sobic002G179700 Sobic009G154100--Sobic002G179700 Sobic009G154100--Sobic007G189400 Sobic005G227050 Sobic005G227050 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic009G154100--Sobic006G032800 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic010G020600--Sobic003G339600 Sobic003G070600 Sobic003G070600 Sobic010G020600--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic010G020600--Sobic009G235700 Sobic007G160300 Sobic007G160300 Sobic010G020600--Sobic007G160300 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic003G291000 Sobic003G291000 Sobic006G241800--Sobic003G291000 Sobic006G241800--Sobic003G018700 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic010G024500 Sobic010G024500 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic006G241800--Sobic010G020600 Sobic006G241800--Sobic001G381100 Sobic006G241800--Sobic001G074100 Sobic007G163400--Sobic008G097700 Sobic004G274600 Sobic004G274600 Sobic007G163400--Sobic004G274600 Sobic007G163400--Sobic010G020600 Sobic007G163400--Sobic003G070600 Sobic009G172700 Sobic009G172700 Sobic007G163400--Sobic009G172700 Sobic003G302000 Sobic003G302000 Sobic007G163400--Sobic003G302000 Sobic002G071850 Sobic002G071850 Sobic007G163400--Sobic002G071850 Sobic003G360700 Sobic003G360700 Sobic007G163400--Sobic003G360700 Sobic007G165800 Sobic007G165800 Sobic007G163400--Sobic007G165800 Sobic008G035400 Sobic008G035400 Sobic006G044200--Sobic008G035400 Sobic001G488400 Sobic001G488400 Sobic006G044200--Sobic001G488400 Sobic005G188500 Sobic005G188500 Sobic006G044200--Sobic005G188500 Sobic006G044200--Sobic004G248100 Sobic006G044200--Sobic006G032800 Sobic003G116100 Sobic003G116100 Sobic006G044200--Sobic003G116100 Sobic006G044200--Sobic007G189400 Sobic002G382500 Sobic002G382500 Sobic006G044200--Sobic002G382500 Sobic002G068400 Sobic002G068400 Sobic006G044200--Sobic002G068400 Sobic008G190000 Sobic008G190000 Sobic001G381100--Sobic008G190000 Sobic001G160000 Sobic001G160000 Sobic001G381100--Sobic001G160000 Sobic001G381100--Sobic001G074100 Sobic006G074900 Sobic006G074900 Sobic001G381100--Sobic006G074900 Sobic005G092700 Sobic005G092700 Sobic001G381100--Sobic005G092700 Sobic004G168600 Sobic004G168600 Sobic001G381100--Sobic004G168600 Sobic001G381100--Sobic010G024500 Sobic001G381100--Sobic006G241800 Sobic003G366000 Sobic003G366000 Sobic001G381100--Sobic003G366000 Sobic002G032500 Sobic002G032500 Sobic004G248100--Sobic002G032500 Sobic003G113500 Sobic003G113500 Sobic004G248100--Sobic003G113500 Sobic004G248100--Sobic010G020600 Sobic004G357000 Sobic004G357000 Sobic004G248100--Sobic004G357000 Sobic003G309400 Sobic003G309400 Sobic004G248100--Sobic003G309400 Sobic003G338200 Sobic003G338200 Sobic004G248100--Sobic003G338200 Sobic004G248100--Sobic003G339600 Sobic004G248100--Sobic006G044200 Sobic007G094200 Sobic007G094200 Sobic004G248100--Sobic007G094200 Sobic002G072700 Sobic002G072700 Sobic007G189400--Sobic002G072700 Sobic007G189400--Sobic005G188500 Sobic009G254500 Sobic009G254500 Sobic007G189400--Sobic009G254500 Sobic007G189400--Sobic003G339600 Sobic007G189400--Sobic001G488400 Sobic007G189400--Sobic010G020600 Sobic007G189400--Sobic006G044200 Sobic001G119200 Sobic001G119200 Sobic007G189400--Sobic001G119200 Sobic002G139800 Sobic002G139800 Sobic007G189400--Sobic002G139800
Octagon: transcription factors


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